RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC39A12Q504Y0 691 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 CYP4A22Q5TCH4 519 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 WDR59Q6PJI9 974 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 RAD9BQ6WBX8 426 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 ZNF571Q7Z3V5 609 aaPredicted RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 KIAA1328Q86T90 577 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 TTC9BQ8N6N2 239 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 SLC2A14Q8TDB8 520 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 RSPH1Q8WYR4 309 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 SEPT5Q99719 369 aaPredicted RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 PACSIN1Q9BY11 444 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 KANSL3Q9P2N6 904 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 CDY1Q9Y6F8 540 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 SYNJ2BP-COX16A0A087WUM0 186 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 A0A087X0T9 212 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 HOXA2O43364 376 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 FAM228BP0C875 321 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 AP3M2P53677 418 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 C11orf70Q9BRQ4 267 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 NKX2-4Q9H2Z4 354 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 GOLPH3Q9H4A6 298 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 IGFLR1Q9H665 355 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 SLC28A3Q9HAS3 691 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 COX16Q9P0S2 106 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 TJP2Q9UDY2 1190 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 MAGED2Q9UNF1 606 aaPredicted RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 INSL6Q9Y581 213 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 NME7Q9Y5B8 376 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 DOCK6Q96HP0 2047 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 USP27XA6NNY8 438 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 ADAM12O43184 909 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 BDNFP23560 247 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 OR1D2P34982 312 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 RFC2P35250 354 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 PPP2R2DQ66LE6 453 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 METTL23Q86XA0 190 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 C1orf131Q8NDD1 294 aaKnown RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 GDPD5Q8WTR4 605 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 CYFIP2Q96F07 1278 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 COLEC11Q9BWP8 271 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 NT5C1AQ9BXI3 368 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 TTYH3Q9C0H2 523 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 GPR88Q9GZN0 384 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 COQ4Q9Y3A0 265 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 PCDHB12Q9Y5F1 795 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 BUB1O43683 1085 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 ODC1P11926 461 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 CYP11B1P15538 503 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 GSDMDP57764 484 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 CLDN10P78369 228 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 VARS2Q5ST30 1063 aaKnown RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 CCDC122Q5T0U0 273 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 PPP1R26Q5T8A7 1209 aaPredicted RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 FOXR2Q6PJQ5 311 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 OR10T2Q8NGX3 314 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 CXorf38Q8TB03 319 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 KCNK16Q96T55 309 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 MRPL9Q9BYD2 267 aaKnown RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 IRX2Q9BZI1 471 aaPredicted RBP9.8□□□□□ -0.84
USP4-202ENST00000351842 HYOU1Q9Y4L1 999 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 DUSP10Q9Y6W6 482 aa9.8□□□□□ -0.84
USP4-202ENST00000351842 GTPBP10A4D1E9 387 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 DYNC1I1O14576 645 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 SCAMP3O14828 347 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 FGF18O76093 207 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 GJC1P36383 396 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 SSR1P43307 286 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 NOP2P46087 812 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 NUMBP49757 651 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 KIF11P52732 1056 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 MAP3K7CLP57077 242 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 TBX2Q13207 712 aaPredicted RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 GOLGA7BQ2TAP0 167 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 MGAT5BQ3V5L5 792 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 DCLRE1AQ6PJP8 1040 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 PLCD3Q8N3E9 789 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 RAD9AQ99638 391 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 MARCH5Q9NX47 278 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 NUDT5Q9UKK9 219 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 GUCA1BQ9UMX6 200 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 YBX2Q9Y2T7 364 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 PAXBP1Q9Y5B6 917 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 ANO9A1A5B4 782 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 P4HA2O15460 535 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 LCP1P13796 627 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 IGFBP4P22692 258 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 SP100P23497 879 aaPredicted RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 TBXAS1P24557 533 aaPredicted RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 GPR15P49685 360 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 SPA17Q15506 151 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 DDR2Q16832 855 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 DNTTIP2Q5QJE6 756 aaKnown RBP9.79□□□□□ -0.84
USP4-202ENST00000351842 KBTBD7Q8WVZ9 684 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 ZNF606Q8WXB4 792 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 PSMB7Q99436 277 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 SYT15Q9BQS2 421 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 PBX4Q9BYU1 374 aa9.79□□□□□ -0.84
USP4-202ENST00000351842 ZNF518BQ9C0D4 1074 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms