RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 IFNAR2P48551 515 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 MOGSQ13724 837 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 P3H1Q32P28 736 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 PPP1R2P3Q6NXS1 205 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 RCOR2Q8IZ40 523 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 OPTNQ96CV9 577 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 C9orf72Q96LT7 481 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 JPH2Q9BR39 696 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-201ENST00000343916 NINJ2Q9NZG7 142 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 CYTH4Q9UIA0 394 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 ATXN2Q99700 1313 aaKnown RBP20.46■□□□□ 0.87
COL9A3-201ENST00000343916 GPR25O00155 361 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 CXCL11O14625 94 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 EIF4BP23588 611 aaKnown RBP20.46■□□□□ 0.87
COL9A3-201ENST00000343916 SURF1Q15526 300 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 PTPN20Q4JDL3 420 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 PPP1R15BQ5SWA1 713 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 MFSD5Q6N075 450 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 CROCCP2Q86T23 111 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 CENPTQ96BT3 561 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 ZNF317Q96PQ6 595 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-201ENST00000343916 SMARCAD1Q9H4L7 1026 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 RNF181Q9P0P0 153 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 SIX4Q9UIU6 781 aa20.46■□□□□ 0.87
COL9A3-201ENST00000343916 SBF1O95248 1867 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 LRRD1A4D1F6 860 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 C5orf60A6NFR6 353 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 LIASO43766 372 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 B4GALT4O60513 344 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 TFDP1Q14186 410 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 SMTNL2Q2TAL5 461 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 RBM41Q96IZ5 413 aaKnown RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 CABS1Q96KC9 395 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 ROPN1BQ9BZX4 212 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 ROPN1Q9HAT0 212 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 ZNF148Q9UQR1 794 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 YBX3P16989 372 aaKnown RBP eCLIP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 RFC1P35251 1148 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 SPOCD1Q6ZMY3 1216 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 C1orf127Q8N9H9 656 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 C3orf20Q8ND61 904 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 ARHGEF2Q92974 986 aaKnown RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 CDCA5Q96FF9 252 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 RPF1Q9H9Y2 349 aaKnown RBP20.45■□□□□ 0.86
COL9A3-201ENST00000343916 IFT122Q9HBG6 1241 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 HMGXB4Q9UGU5 601 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 TBK1Q9UHD2 729 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 PCDHGC3Q9UN70 934 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 CEP83Q9Y592 693 aa20.45■□□□□ 0.86
COL9A3-201ENST00000343916 HBP1O60381 514 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CETN2P41208 172 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CAV1Q03135 178 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 LRRC14Q15048 493 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 SPRED3Q2MJR0 410 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 GKAP1Q5VSY0 366 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-201ENST00000343916 YTHDF3Q7Z739 585 aaKnown RBP20.44■□□□□ 0.86
COL9A3-201ENST00000343916 MGARPQ8TDB4 240 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 STMN4Q9H169 189 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-201ENST00000343916 SDCBP2Q9H190 292 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 KCNH4Q9UQ05 1017 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 ANK1P16157 1881 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 TJP3O95049 919 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CYP2C8P10632 490 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CDH5P33151 784 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-201ENST00000343916 KCNT1Q5JUK3 1230 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 EXOC8Q8IYI6 725 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CACNA2D3Q8IZS8 1091 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 JOSD2Q8TAC2 188 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 CPB2Q96IY4 423 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 TWNKQ96RR1 684 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 ZNF518BQ9C0D4 1074 aa20.44■□□□□ 0.86
COL9A3-201ENST00000343916 SAE1Q9UBE0 346 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-201ENST00000343916 H0YHG0 523 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 C22orf31O95567 290 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 ITGB3P05106 788 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 CETPP11597 493 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 INSRRP14616 1297 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 PIGHQ14442 188 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-201ENST00000343916 TTLL4Q14679 1199 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 HP1BP3Q5SSJ5 553 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-201ENST00000343916 CYP4F22Q6NT55 531 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 TAOK1Q7L7X3 1001 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 SERPINB12Q96P63 405 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 SMYD3Q9H7B4 428 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 MLXIPLQ9NP71 852 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 hCG_1818297A0A087WSY0 165 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 A0A087WZ62 844 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 LACTBL1A8MY62 500 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 MNAT1P51948 309 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 CNGA2Q16280 664 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 ZNF667Q5HYK9 610 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 JADE1Q6IE81 842 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 HIBCHQ6NVY1 386 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-201ENST00000343916 KIAA0319LQ8IZA0 1049 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 CYP4X1Q8N118 509 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 EMC1Q8N766 993 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 CPXM1Q96SM3 734 aa20.43■□□□□ 0.86
COL9A3-201ENST00000343916 RBM15Q96T37 977 aaKnown RBP eCLIP20.43■□□□□ 0.86
COL9A3-201ENST00000343916 FDXACB1Q9BRP7 624 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-201ENST00000343916 ZWILCHQ9H900 591 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms