RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TAF4O00268 1085 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FOXD2O60548 495 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PLEKHA8P1O95397 391 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TGDSO95455 350 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ITGB1P05556 798 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SRGAP2BP0DMP2 458 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ACTN1P12814 892 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 PRDX6P30041 224 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 HSD17B2P37059 387 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 IREB2P48200 963 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SELPLGQ14242 412 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ZBED5Q49AG3 693 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 NADK2Q4G0N4 442 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FIP1L1Q6UN15 594 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SRBD1Q8N5C6 995 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SLC4A11Q8NBS3 891 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SUPT20HQ8NEM7 779 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TSPAN14Q8NG11 270 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 GRK7Q8WTQ7 553 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 DLG3Q92796 817 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 EDC3Q96F86 508 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 TRIM8Q9BZR9 551 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 INTS2Q9H0H0 1204 aaKnown RBP4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SNX25Q9H3E2 840 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 SYTL2Q9HCH5 934 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 EMILIN3Q9NT22 766 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 GDAP2Q9NXN4 497 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 MOSPD1Q9UJG1 213 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ARHGAP26Q9UNA1 814 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 ACEP12821 1306 aa4.34□□□□□ -1.71
NEDD4-201ENST00000338963 FAM47DPA6NHR8 397 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 GOLGA8SH3BPF8 625 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 K7EPI3 171 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CDK2AP1O14519 115 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 BACH1O14867 736 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 EXOC3O60645 756 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 RPN1P04843 607 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CDH2P19022 906 aaPredicted RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 FDFT1P37268 417 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 VCPP55072 806 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MLLT6P55198 1093 aaPredicted RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 FAM76BQ5HYJ3 339 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 RFPL4BQ6ZWI9 263 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MAEAQ7L5Y9 396 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 PRUNE1Q86TP1 453 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM22Q8IYM9 498 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 TTC8Q8TAM2 541 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SH3KBP1Q96B97 665 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CMTM5Q96DZ9 223 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CENPOQ9BU64 300 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 YTHDF1Q9BYJ9 559 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 GGNBP2Q9H3C7 697 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SERTAD1Q9UHV2 236 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SLC8A2Q9UPR5 921 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 PCDHGA10Q9Y5H3 936 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SNX8Q9Y5X2 465 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 A0A1W2PRG6 482 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 ISPDA4D126 451 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 GSC2O15499 205 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 JAK2O60674 1132 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CDH16O75309 829 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 NCAM1P13591 858 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 BRAFP15056 766 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 GP5P40197 560 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MTIF2P46199 727 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 P2RX3P56373 397 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SNX16P57768 344 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 TMPRSS15P98073 1019 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 FKBP4Q02790 459 aaKnown RBP eCLIP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 OXA1LQ15070 435 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MAPRE1Q15691 268 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF362Q5T0B9 420 aaPredicted RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF618Q5T7W0 954 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MEI1Q5TIA1 1274 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 RSBN1Q5VWQ0 802 aaPredicted RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 NOP9Q86U38 636 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SPATA18Q8TC71 538 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SLC16A10Q8TF71 515 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 SEC14L1Q92503 715 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 ALKBH8Q96BT7 664 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 MEIS3Q99687 375 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CADM1Q9BY67 442 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 WWP1Q9H0M0 922 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 S100A14Q9HCY8 104 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CD93Q9NPY3 652 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF221Q9UK13 617 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 PHTF1Q9UMS5 762 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 REXO2Q9Y3B8 237 aaKnown RBP4.34□□□□□ -1.72
NEDD4-201ENST00000338963 CEPT1Q9Y6K0 416 aa4.34□□□□□ -1.72
NEDD4-201ENST00000338963 TROQ12816 1431 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ATP2A1O14983 1001 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 ZW10O43264 779 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 MOCS3O95396 460 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 SRGNP10124 158 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 COL6A2P12110 1019 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 KRT10P13645 584 aa4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TARSP26639 723 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 MZF1P28698 734 aaPredicted RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 GDI2P50395 445 aaKnown RBP4.33□□□□□ -1.72
NEDD4-201ENST00000338963 TRIP10Q15642 601 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms