RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CALB1P05937 261 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 C2CD6Q53TS8 623 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 SGO2Q562F6 1265 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 DPH6Q7L8W6 267 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 KBTBD7Q8WVZ9 684 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 PGBD4Q96DM1 585 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 HEXIM2Q96MH2 286 aaKnown RBP16.42■□□□□ 0.22
LIMS1-202ENST00000338045 RNF208Q9H0X6 261 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 TSPYL2Q9H2G4 693 aaPredicted RBP16.42■□□□□ 0.22
LIMS1-202ENST00000338045 RSAD1Q9HA92 442 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 MRPL47Q9HD33 250 aaKnown RBP16.42■□□□□ 0.22
LIMS1-202ENST00000338045 UBN1Q9NPG3 1134 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 RGS18Q9NS28 235 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 KCNK3O14649 394 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 INPPL1O15357 1258 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 MICAL2O94851 1124 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 FAM163BP0C2L3 166 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 PAFAH1B1P43034 410 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 MAMLD1Q13495 774 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 MESDQ14696 234 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 STILQ15468 1287 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 PTPROQ16827 1216 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 CFAP221Q4G0U5 840 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 TEX35Q5T0J7 233 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 LCLAT1Q6UWP7 414 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 LRRC8DQ7L1W4 858 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 ECHDC2Q86YB7 292 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 CD101Q93033 1021 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 SCINQ9Y6U3 715 aa16.41■□□□□ 0.22
LIMS1-202ENST00000338045 MIF4GDA9UHW6 222 aaKnown RBP16.4■□□□□ 0.22
LIMS1-202ENST00000338045 C9IYK1 514 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 SELPP16109 830 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 COMTP21964 271 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 SCNN1GP51170 649 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 DNA2P51530 1060 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 BFSP2Q13515 415 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 LLGL2Q6P1M3 1020 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 RTN4RL1Q86UN2 441 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-202ENST00000338045 ERICH1Q86X53 443 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 TOP6BLQ8N6T0 577 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 GPR161Q8N6U8 529 aaKnown RBP16.4■□□□□ 0.22
LIMS1-202ENST00000338045 NOA1Q8NC60 698 aaKnown RBP16.4■□□□□ 0.22
LIMS1-202ENST00000338045 MS4A14Q96JA4 679 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 BTBD6Q96KE9 485 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 PARVAQ9NVD7 372 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 CYTH4Q9UIA0 394 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 ANAPC7Q9UJX3 599 aa16.4■□□□□ 0.22
LIMS1-202ENST00000338045 FGFR1P11362 822 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 RPL9P32969 192 aaKnown RBP16.39■□□□□ 0.22
LIMS1-202ENST00000338045 GPD2P43304 727 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 GSCP56915 257 aaPredicted RBP16.39■□□□□ 0.22
LIMS1-202ENST00000338045 PTPN20Q4JDL3 420 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 CCDC181Q5TID7 509 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 CRYBG2Q8N1P7 616 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 RASGEF1CQ8N431 466 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 APPL2Q8NEU8 664 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 SPATA4Q8NEY3 305 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 ACTRT1Q8TDG2 376 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 CARD9Q9H257 536 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 L1RE1Q9UN81 338 aa16.39■□□□□ 0.22
LIMS1-202ENST00000338045 PITPNM1O00562 1244 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 MYCP01106 439 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-202ENST00000338045 WARSP23381 471 aaKnown RBP16.39■□□□□ 0.21
LIMS1-202ENST00000338045 FAM189BP81408 668 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 GPNMBQ14956 572 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 PKDCCQ504Y2 493 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 FAM43BQ6ZT52 329 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-202ENST00000338045 SLC24A5Q71RS6 500 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 OR6B3Q8NGW1 331 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 LINC01599Q8WXQ3 324 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 SELENOOQ9BVL4 669 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 TRIM7Q9C029 511 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 CRISPLD2Q9H0B8 497 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 WNT8AQ9H1J5 351 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 EHD2Q9NZN4 543 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 STRIP2Q9ULQ0 834 aa16.39■□□□□ 0.21
LIMS1-202ENST00000338045 TMEM110-MUSTN1A8MSY1 372 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 M0QYV0 167 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 MYO1FO00160 1098 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 HUS1O60921 280 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 EOMESO95936 686 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 MNX1P50219 401 aaPredicted RBP16.38■□□□□ 0.21
LIMS1-202ENST00000338045 GRIK3Q13003 919 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 PPP1R15BQ5SWA1 713 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 DCAF12L1Q5VU92 463 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 ARHGAP17Q68EM7 881 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 PHLDB2Q86SQ0 1253 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 ACOT1Q86TX2 421 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 C12orf29Q8N999 325 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 C3orf20Q8ND61 904 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 FEZF2Q8TBJ5 459 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 FTHL17Q9BXU8 183 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 SMARCAL1Q9NZC9 954 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 TSPAN16Q9UKR8 245 aa16.38■□□□□ 0.21
LIMS1-202ENST00000338045 TTC7AQ9ULT0 858 aaPredicted RBP16.38■□□□□ 0.21
LIMS1-202ENST00000338045 A8MXQ7 604 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PODXLO00592 558 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CTNNA2P26232 953 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CTNNA1P35221 906 aaKnown RBP16.37■□□□□ 0.21
LIMS1-202ENST00000338045 GNL1P36915 607 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms