RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 FNDC3BQ53EP0 1204 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 FSTL4Q6MZW2 842 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 OGFOD3Q6PK18 319 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 MTHFD1LQ6UB35 978 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 RAD9BQ6WBX8 426 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 LDHAL6AQ6ZMR3 332 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 CAPN12Q6ZSI9 719 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 REC114Q7Z4M0 266 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 CABP7Q86V35 215 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SPACA3Q8IXA5 215 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 ETFBKMTQ8IXQ9 262 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SPIRE2Q8WWL2 714 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 KCTD13Q8WZ19 329 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 HVCN1Q96D96 273 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 RIT2Q99578 217 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 DPH2Q9BQC3 489 aaPredicted RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 API5Q9BZZ5 524 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SRCIN1Q9C0H9 1055 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 NXF3Q9H4D5 531 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 PRDM8Q9NQV8 689 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 PRDM5Q9NQX1 630 aaPredicted RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 MRPL17Q9NRX2 175 aaKnown RBP1.78□□□□□ -2.13
LINC00643-201ENST00000334389 SLC5A6Q9Y289 635 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 HS3ST3A1Q9Y663 406 aa1.78□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC187A0A096LP49 1063 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 C2orf81A6NN90 581 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GRXCR1A8MXD5 290 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 WDR64B1ANS9 1081 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 C21orf140B9A014 251 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SPECC1L-ADORA2AF8WAN1 911 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ZW10O43264 779 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ADH1BP00325 375 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 PARP1P09874 1014 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 MAPTP10636 758 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 DARSP14868 501 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GNSP15586 552 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 HOXC12P31275 282 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 NOVA1P51513 510 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 PRSS12P56730 875 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 AP2B1P63010 937 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ZFP36L1Q07352 338 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ABHD18Q0P651 414 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 NR1H3Q13133 447 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 CLN3Q13286 438 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 FKBP5Q13451 457 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 BTG3Q14201 252 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SGO2Q562F6 1265 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SYCP2LQ5T4T6 812 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 FHL5Q5TD97 284 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ARMC3Q5W041 872 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 LIN28BQ6ZN17 250 aaKnown RBP eCLIP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 DZIP1Q86YF9 867 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GPR152Q8TDT2 470 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 OSCP1Q8WVF1 389 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ATP2A3Q93084 1043 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 FAM193BQ96PV7 902 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 UCN2Q96RP3 112 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 PKMYT1Q99640 499 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SMAD5Q99717 465 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TRIM8Q9BZR9 551 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SLC25A18Q9H1K4 315 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 AZI2Q9H6S1 392 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 DCP1AQ9NPI6 582 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 THSD1Q9NS62 852 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 RNF146Q9NTX7 359 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GMIPQ9P107 970 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GCNT4Q9P109 453 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 USP18Q9UMW8 372 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 NAALADL1Q9UQQ1 740 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 MAP1BP46821 2468 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 LRP1BQ9NZR2 4599 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TARSL2A2RTX5 802 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 METTL12A8MUP2 240 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 BTBD18B2RXH4 712 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC188H7C350 402 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 DDX3XO00571 662 aaKnown RBP eCLIP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ENC1O14682 589 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 STBD1O95210 358 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 MT-ND3P03897 115 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ZDHHC11BP0C7U3 371 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 PROZP22891 400 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ATP1A2P50993 1020 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 JAK3P52333 1124 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 BCAR1P56945 870 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TAP2Q03519 686 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF543Q08ER8 600 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ETFDHQ16134 617 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 GRIK5Q16478 980 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 AMHR2Q16671 573 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 HYAL4Q2M3T9 481 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 C5orf22Q49AR2 442 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 Q4G0T1 1027 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SLC45A4Q5BKX6 768 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 LYSMD4Q5XG99 296 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 VITQ6UXI7 678 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TMPRSS9Q7Z410 1059 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ARHGAP12Q8IWW6 846 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 REXO1Q8N1G1 1221 aaKnown RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 HDDC3Q8N4P3 179 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms