RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 TRIM72Q6ZMU5 477 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 METTL23Q86XA0 190 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 ZNF606Q8WXB4 792 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 TFAP2BQ92481 460 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 ZSWIM1Q9BR11 485 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 SEPT11Q9NVA2 429 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 NAGPAQ9UK23 515 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 SLC4A7Q9Y6M7 1214 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 ATP8B3O60423 1300 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 ZSCAN12O43309 604 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 MED7O43513 233 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 SF3B1O75533 1304 aaKnown RBP eCLIP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 MSNP26038 577 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 CYP27A1Q02318 531 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 C10orf76Q5T2E6 689 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 PALB2Q86YC2 1186 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 CCAR2Q8N163 923 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 CRYBG2Q8N1P7 616 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 TNIP3Q96KP6 325 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 PCDHB18PQ96TA0 734 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 LUC7LQ9NQ29 371 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 PCDHGC3Q9UN70 934 aa10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 MRPL42Q9Y6G3 142 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-201ENST00000327028 VWA8A3KMH1 1905 aa10.9□□□□□ -0.67
VIPAS39-201ENST00000327028 SYN3O14994 580 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 HCRTO43612 131 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 LAG3P18627 525 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ALDH7A1P49419 539 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ELAVL2Q12926 359 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 STILQ15468 1287 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 CLEC16AQ2KHT3 1053 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 SGO2Q562F6 1265 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 CCDC122Q5T0U0 273 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ALKBH5Q6P6C2 394 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ACOT1Q86TX2 421 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 HERC6Q8IVU3 1022 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 BCL7CQ8WUZ0 217 aaPredicted RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 HEXIM2Q96MH2 286 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 DPEP3Q9H4B8 488 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 DDX43Q9NXZ2 648 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 PCDHA13Q9Y5I0 950 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 TIMM13Q9Y5L4 95 aaPredicted RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 O00370 1275 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 LSM8O95777 96 aaKnown RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 CYP1A1P04798 512 aaPredicted RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 PDGFRBP09619 1106 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 LMO2P25791 158 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 VAV2P52735 878 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 FUT10Q6P4F1 479 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 C17orf53Q8N3J3 647 aaPredicted RBP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 TXLNBQ8N3L3 684 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 COLGALT1Q8NBJ5 622 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 PPP1R13BQ96KQ4 1090 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ZNF558Q96NG5 402 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 PDCL3Q9H2J4 239 aa10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.89□□□□□ -0.67
VIPAS39-201ENST00000327028 ESPNB1AK53 854 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 GZMAP12544 262 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 ATP2A2P16615 1042 aaKnown RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 PCSK1P29120 753 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 PBX3P40426 434 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 MAGEA1P43355 309 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 MAGEA10P43363 369 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 CNGA2Q16280 664 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 SPOUT1Q5T280 376 aaKnown RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 ARHGAP17Q68EM7 881 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 OVOS1Q6IE37 1185 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 KCNT2Q6UVM3 1135 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 KIAA1328Q86T90 577 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 TMEM173Q86WV6 379 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 B3GALNT2Q8NCR0 500 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 SP7Q8TDD2 431 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 RTP3Q9BQQ7 232 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 SYT15Q9BQS2 421 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 ZBED2Q9BTP6 218 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 CDH9Q9ULB4 789 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 INSL6Q9Y581 213 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 USP27XA6NNY8 438 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 NT5C1B-RDH14C9J2C7 533 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 RTN2O75298 545 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 EFEMP2O95967 443 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 CFHP08603 1231 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 FGFR3P22607 806 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 TKTP29401 623 aaKnown RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 CDH5P33151 784 aaPredicted RBP10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 NOMO3P69849 1222 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 PPP1R2P3Q6NXS1 205 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 LCLAT1Q6UWP7 414 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 ZNF662Q6ZS27 426 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 THEM5Q8N1Q8 247 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 SLC39A11Q8N1S5 342 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 IGSF21Q96ID5 467 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 RAD9AQ99638 391 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 GPR62Q9BZJ7 368 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 ISCUQ9H1K1 167 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 TAS2R14Q9NYV8 317 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 INTUQ9ULD6 942 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 GOLGA6L9A6NEM1 432 aa10.88□□□□□ -0.67
VIPAS39-201ENST00000327028 MICAL2O94851 1124 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms