RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RPS7P62081 194 aaKnown RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RPS16P62249 146 aaKnown RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF543Q08ER8 600 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RESTQ13127 1097 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 OS9Q13438 667 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 FOXE3Q13461 319 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 HLXQ14774 488 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 IQCB1Q15051 598 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 CYP2A13Q16696 494 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 LONRF1Q17RB8 773 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 LONRF3Q496Y0 759 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 PREPLQ4J6C6 727 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 MIIPQ5JXC2 388 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 TMPRSS9Q7Z410 1059 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 MICU3Q86XE3 530 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 SLC15A4Q8N697 577 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 PSD4Q8NDX1 1056 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 CPEB3Q8NE35 698 aaKnown RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 SH3RF3Q8TEJ3 882 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF483Q8TF39 744 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 FUBP1Q96AE4 644 aaKnown RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 LENG9Q96B70 501 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RNF31Q96EP0 1072 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 SLC39A13Q96H72 371 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 GPR20Q99678 358 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 COLEC11Q9BWP8 271 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 BRIP1Q9BX63 1249 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ALOXE3Q9BYJ1 711 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 NLRC4Q9NPP4 1024 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ZSCAN32Q9NX65 697 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 DKK2Q9UBU2 259 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 SHOC2Q9UQ13 582 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RAD54BQ9Y620 910 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 B8ZZF3 427 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 PYCARD-AS1I3L0S3 204 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 KPNA5O15131 536 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 VPS4BO75351 444 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 NDUFA10O95299 355 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 PARP1P09874 1014 aaKnown RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 ITGALP20701 1170 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 HTR3AP46098 478 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 GCLCP48506 637 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 TOB1P50616 345 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 VAV2P52735 878 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 FPGSQ05932 587 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 BTKQ06187 659 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 DYRK1AQ13627 763 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 TUBA3CQ13748 450 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 TIGD2Q4W5G0 525 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 C3orf38Q5JPI3 329 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SP5Q6BEB4 398 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 TAF2Q6P1X5 1199 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 TUBA3EQ6PEY2 450 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 LAYNQ6UX15 382 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SLC30A10Q6XR72 485 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 MICALCLQ6ZW33 695 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 GAS2L3Q86XJ1 694 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 FAM186BQ8IYM0 893 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 MPP5Q8N3R9 675 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SDR16C5Q8N3Y7 309 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 NSUN7Q8NE18 718 aaKnown RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 PARD3BQ8TEW8 1205 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 IPCEF1Q8WWN9 437 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SNX19Q92543 992 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 HAS1Q92839 578 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SPSB4Q96A44 273 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF503Q96F45 646 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 LRIG1Q96JA1 1093 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 CCDC138Q96M89 665 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 SLC46A1Q96NT5 459 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 MS4A7Q9GZW8 240 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 STARD7Q9NQZ5 370 aa4.1□□□□□ -1.75
HMGB1-201ENST00000326004 MRPS18AQ9NVS2 196 aaKnown RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 VSX1Q9NZR4 365 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-201ENST00000326004 KAT6AQ92794 2004 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 POM121BA6NF01 834 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 CCP110O43303 1012 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ANXA2P07355 339 aaKnown RBP4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ZFP36P26651 326 aaKnown RBP4.09□□□□□ -1.75
HMGB1-201ENST00000326004 LRPAP1P30533 357 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 STT3AP46977 705 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 NPTX2P47972 431 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 NDUFV1P49821 464 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 GUCY1B3Q02153 619 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 BIRC2Q13490 618 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 BOP1Q14137 746 aaKnown RBP4.09□□□□□ -1.75
HMGB1-201ENST00000326004 MGAT5BQ3V5L5 792 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 DCAF12L1Q5VU92 463 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 SFRP4Q6FHJ7 346 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-201ENST00000326004 RHOUQ7L0Q8 258 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 SRLQ86TD4 932 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ARHGEF19Q8IW93 802 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ADGRG5Q8IZF4 528 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 OR2C3Q8N628 320 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ACRBPQ8NEB7 543 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 OR56A3Q8NH54 315 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 IQCDQ96DY2 449 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 SNX22Q96L94 193 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 RIPOR3Q96MK2 946 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 OSBPL9Q96SU4 736 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms