RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CPNE8Q86YQ8 564 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 WDTC1Q8N5D0 677 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 HDAC7Q8WUI4 952 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 AP1M1Q9BXS5 423 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ST3GAL5Q9UNP4 418 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PCDHA3Q9Y5H8 950 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PCNTO95613 3336 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 GRIN2DO15399 1336 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 SCN1AP35498 2009 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ZMYND10O75800 440 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 NDST1P52848 882 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 FOXD4Q12950 439 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PTGISQ16647 500 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 BEND6Q5SZJ8 279 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PXYLP1Q8TE99 480 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 STIM2Q9P246 746 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 DMGDHQ9UI17 866 aaKnown RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 SNX9Q9Y5X1 595 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 RPS6KL1Q9Y6S9 549 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 VDRP11473 427 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 SLC7A5Q01650 507 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ERICH1Q86X53 443 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 KLHL7Q8IXQ5 586 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 RNF19AQ9NV58 838 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ATP8B1O43520 1251 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 CABYRO75952 493 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 PROSCO94903 275 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 THPOP40225 353 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 MRPS25P82663 173 aaKnown RBP15.11■□□□□ 0.01
C9orf3-202ENST00000297979 NFX1Q12986 1120 aaKnown RBP15.11■□□□□ 0.01
C9orf3-202ENST00000297979 MAP9Q49MG5 647 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 SEL1L2Q5TEA6 688 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 ARRDC4Q8NCT1 418 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 FEZF2Q8TBJ5 459 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 HEXIM2Q96MH2 286 aaKnown RBP15.11■□□□□ 0.01
C9orf3-202ENST00000297979 ZNF560Q96MR9 790 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 NT5C1AQ9BXI3 368 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 CHST12Q9NRB3 414 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.11■□□□□ 0.01
C9orf3-202ENST00000297979 RWDD2BP57060 319 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 SGO2Q562F6 1265 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 DNAJC24Q6P3W2 148 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 STRIP2Q9ULQ0 834 aa15.11■□□□□ 0.01
C9orf3-202ENST00000297979 TCRBV5S1A1TA0A578 114 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 PIRO00625 290 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 MICAL2O94851 1124 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 CYP3A5P20815 502 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 VEGFBP49765 207 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 ITGA7Q13683 1181 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 FBXO47Q5MNV8 452 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-202ENST00000297979 KIAA1257Q9ULG3 409 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 O00370 1275 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 GPR182O15218 404 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 ITGA4P13612 1032 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 PNPLA4P41247 253 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 ACLYP53396 1101 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 CNGA2Q16280 664 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 PTPN20Q4JDL3 420 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 CCNI2Q6ZMN8 369 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-202ENST00000297979 HACE1Q8IYU2 909 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 MRPL45Q9BRJ2 306 aaKnown RBP15.1■□□□□ 0.01
C9orf3-202ENST00000297979 FAM105AQ9NUU6 356 aa15.1■□□□□ 0.01
C9orf3-202ENST00000297979 GOLGA6L10A0A0M3HER8 536 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 M0QYV0 167 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 MAN1A1P33908 653 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 TAP1Q03518 808 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 PTK7Q13308 1070 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 AADACL2Q6P093 401 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 C3orf20Q8ND61 904 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 IP6K2Q9UHH9 426 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 CYTH4Q9UIA0 394 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 LCMT1Q9UIC8 334 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 NOD1Q9Y239 953 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 RAD51CO43502 376 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 HEXIM1O94992 359 aaKnown RBP15.09■□□□□ 0.01
C9orf3-202ENST00000297979 GJB6O95452 261 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 PYGMP11217 842 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 HSPA6P17066 643 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 SOX4Q06945 474 aaPredicted RBP15.09■□□□□ 0.01
C9orf3-202ENST00000297979 CYP4A22Q5TCH4 519 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 PLVAPQ9BX97 442 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 FUT8Q9BYC5 575 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 DDX47Q9H0S4 455 aaKnown RBP15.09■□□□□ 0.01
C9orf3-202ENST00000297979 SLITRK6Q9H5Y7 841 aa15.09■□□□□ 0.01
C9orf3-202ENST00000297979 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.09■□□□□ 0.01
C9orf3-202ENST00000297979 TMEM191CA6NGB0 347 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 SART1O43290 800 aaKnown RBP15.08■□□□□ 0.01
C9orf3-202ENST00000297979 INHAP05111 366 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 TNFRSF8P28908 595 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 RPL7AP62424 266 aaKnown RBP15.08■□□□□ 0.01
C9orf3-202ENST00000297979 STILQ15468 1287 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 MCEEQ96PE7 176 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 HINFPQ9BQA5 517 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 AGO3Q9H9G7 860 aaKnown RBP15.08■□□□□ 0.01
C9orf3-202ENST00000297979 ERVK-5Q9HDB9 667 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 L1RE1Q9UN81 338 aa15.08■□□□□ 0.01
C9orf3-202ENST00000297979 MOXD2PA6NHM9 499 aa15.08■□□□□ 0
C9orf3-202ENST00000297979 KPNA7A9QM74 516 aa15.08■□□□□ 0
C9orf3-202ENST00000297979 PTGESO14684 152 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms