RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ESRRGP62508 458 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 LAMTOR4Q0VGL1 99 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ZBTB41Q5SVQ8 909 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ADGRF2Q8IZF7 708 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 TC2NQ8N9U0 490 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 C9orf72Q96LT7 481 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 KANSL3Q9P2N6 904 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 SMAPO00193 183 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 SYF2O95926 243 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 PYGLP06737 847 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 RGS4P49798 205 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ALDH5A1P51649 535 aaPredicted RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 TMCO4Q5TGY1 634 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 REPS2Q8NFH8 660 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ANKS1AQ92625 1134 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 IL17RBQ9NRM6 502 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 TPX2Q9ULW0 747 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 FOXN3O00409 490 aaPredicted RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 CDH16O75309 829 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 HAUS5O94927 633 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 HMOX2P30519 316 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 USP10Q14694 798 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 MTFR1Q15390 333 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 GRAMD1BQ3KR37 738 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 NAPEPLDQ6IQ20 393 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 LRRC43Q8N309 656 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 RNF208Q9H0X6 261 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 KCNQ5Q9NR82 932 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 PCDHB12Q9Y5F1 795 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ITSN1Q15811 1721 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 KIAA1210Q9ULL0 1709 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 FGFR4P22455 802 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 EEF1B2P24534 225 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ETFBP38117 255 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 LHX1P48742 406 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ARL4DP49703 201 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 BCAT1P54687 386 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 SH3BGRP55822 239 aaPredicted RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 PTRHD1Q6GMV3 140 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 ACAD10Q6JQN1 1059 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 SLC30A10Q6XR72 485 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 LRRC1Q9BTT6 524 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 MRPL40Q9NQ50 206 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 DBR1Q9UK59 544 aaKnown RBP19.37■□□□□ 0.69
PCDH1-201ENST00000287008 INTUQ9ULD6 942 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 NEU2Q9Y3R4 380 aa19.37■□□□□ 0.69
PCDH1-201ENST00000287008 PTPRAP18433 802 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CASP4P49662 377 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 NTRK3Q16288 839 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CSDE1O75534 798 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 LUC7L3O95232 432 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 VIL1P09327 827 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 HOXC6P09630 235 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 RAB27AP51159 221 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 EFTUD2Q15029 972 aaKnown RBP eCLIP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 ZNF467Q7Z7K2 595 aaPredicted RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 DNAJB3Q8WWF6 145 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 COG4Q9H9E3 785 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 XPO7Q9UIA9 1087 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 ANGPTL2Q9UKU9 493 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 PLAGL2Q9UPG8 496 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 MBL2P11226 248 aaPredicted RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 RARRES1P49788 294 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 RAD9BQ6WBX8 426 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CPB2Q96IY4 423 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 MRIQ9BWK5 157 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 A1CFQ9NQ94 594 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 TARSL2A2RTX5 802 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CNTN2Q02246 1040 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 FBXO47Q5MNV8 452 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 C4orf22Q6V702 233 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 SLC25A41Q8N5S1 370 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 MS4A14Q96JA4 679 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 ASPSCR1Q9BZE9 553 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CYP3A43Q9HB55 503 aa19.36■□□□□ 0.69
PCDH1-201ENST00000287008 CPSF2Q9P2I0 782 aaKnown RBP19.36■□□□□ 0.69
PCDH1-201ENST00000287008 GHRP10912 638 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 PTGER2P43116 358 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 SERPINB9P50453 376 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 TAF11Q15544 211 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 TGS1Q96RS0 853 aaKnown RBP19.35■□□□□ 0.69
PCDH1-201ENST00000287008 KDM4CQ9H3R0 1056 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 F5H5T6 163 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 PRPF4O43172 522 aaKnown RBP eCLIP19.35■□□□□ 0.69
PCDH1-201ENST00000287008 TOB1P50616 345 aaPredicted RBP19.35■□□□□ 0.69
PCDH1-201ENST00000287008 VGLL4Q14135 290 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 MYBPC2Q14324 1141 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 RBBP7Q16576 425 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 NIPA1Q7RTP0 329 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 KIRREL3Q8IZU9 778 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 TRIM51Q9BSJ1 452 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 ZFP69BQ9UJL9 534 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 STX7O15400 261 aaKnown RBP19.35■□□□□ 0.69
PCDH1-201ENST00000287008 PPFIA2O75334 1257 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 PYGBP11216 843 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 INPP1P49441 399 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 WDR49Q8IV35 697 aa19.35■□□□□ 0.69
PCDH1-201ENST00000287008 USP13Q92995 863 aaPredicted RBP19.35■□□□□ 0.69
PCDH1-201ENST00000287008 LRRC37BQ96QE4 947 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms