RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 ARMCX4Q5H9R4 360 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF513Q8N8E2 541 aaPredicted RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SPATA18Q8TC71 538 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ERP44Q9BS26 406 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 MYH7P12883 1935 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ENO3P13929 434 aaPredicted RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 GTF2H1P32780 548 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 LONRF1Q17RB8 773 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ST13P5Q8NFI4 369 aaPredicted RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 LPAR1Q92633 364 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SRPK1Q96SB4 655 aaKnown RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 THTPAQ9BU02 230 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ZSCAN32Q9NX65 697 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SAC3D1A6NKF1 404 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PDZK1P1A8MUH7 402 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PHF20L1A8MW92 1017 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 AIM2O14862 343 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 NPEPPSP55786 919 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 USP10Q14694 798 aaKnown RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ATXN7L3BQ96GX2 97 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 GOLPH3Q9H4A6 298 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 HEATR9A2RTY3 570 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 CAPZA2P47755 286 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 FAM83EQ2M2I3 478 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF394Q53GI3 561 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PID1Q7Z2X4 250 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 C11orf74Q86VG3 221 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SH3GL1Q99961 368 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 KLHL4Q9C0H6 718 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SESN2P58004 480 aaPredicted RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SNRNP27Q8WVK2 155 aaKnown RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 WNK4Q96J92 1243 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 MAP3K14Q99558 947 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 CARD9Q9H257 536 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ITGB1BP2Q9UKP3 347 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SOAT2O75908 522 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 AKT1P31749 480 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 KRT20P35900 424 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PEX5P50542 639 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 NCF4Q15080 339 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 FBXW10Q5XX13 1052 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 RMND5AQ9H871 391 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 DTNAQ9Y4J8 743 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 UCHL3P15374 230 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 BRD8Q9H0E9 1235 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ROBO2Q9HCK4 1378 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 EXTL3O43909 919 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 IFNA14P01570 189 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 E2F7Q96AV8 911 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ILKAPQ9H0C8 392 aaPredicted RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 USE1Q9NZ43 259 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 SOX13Q9UN79 622 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 ZC3H4Q9UPT8 1303 aaKnown RBP8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PCSK1P29120 753 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 UNC45BQ8IWX7 931 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 PCDHB2Q9Y5E7 798 aa8.31□□□□□ -1.08
LIMD1-201ENST00000273317 B2RBV5 119 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 GRK2P25098 689 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 HOXD10P28358 340 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 GRIK1P39086 918 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 TRMT5Q32P41 509 aaKnown RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 SWSAP1Q6NVH7 229 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 LRRC8DQ7L1W4 858 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 CCDC60Q8IWA6 550 aaPredicted RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 STKLD1Q8NE28 680 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ZFRQ96KR1 1074 aaKnown RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 PHF20Q9BVI0 1012 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 RAB6BQ9NRW1 208 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 F5H423 210 aaPredicted RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 RNF103O00237 685 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 CYTH3O43739 400 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ALDH1A1P00352 501 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 RRM2P31350 389 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ITGA8P53708 1063 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 SV2CQ496J9 727 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 NEDD1Q8NHV4 660 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 TFB1MQ8WVM0 346 aaKnown RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ALG13Q9NP73 1137 aaKnown RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 MOSPD1Q9UJG1 213 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ZMYND8Q9ULU4 1186 aaPredicted RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 KIF28PB7ZC32 967 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 DCAF4L1Q3SXM0 396 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 BARGINQ6ZT62 677 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 SHCBP1Q8NEM2 672 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 JADE3Q92613 823 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ZBED2Q9BTP6 218 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 UBXN8O00124 270 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 EXOSC10Q01780 885 aaKnown RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 CHI3L2Q15782 390 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 NAPEPLDQ6IQ20 393 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 GINS4Q9BRT9 223 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 VCPKMTQ9H867 229 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 NARFQ9UHQ1 456 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 CALB2P22676 271 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 POU4F1Q01851 419 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 ACCSLQ4AC99 568 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 E4F1Q66K89 784 aaPredicted RBP8.3□□□□□ -1.08
LIMD1-201ENST00000273317 MS4A14Q96JA4 679 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 KCNF1Q9H3M0 494 aa8.3□□□□□ -1.08
LIMD1-201ENST00000273317 NOD2Q9HC29 1040 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms