RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 MDH1BQ5I0G3 518 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 ICE2Q659A1 982 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 DENND1BQ6P3S1 775 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 TRMT10CQ7L0Y3 403 aaKnown RBP13.2□□□□□ -0.3
UBXN4-201ENST00000272638 RCOR2Q8IZ40 523 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 NOD1Q9Y239 953 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 TTLL13PA6NNM8 815 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 CTCFP49711 727 aaPredicted RBP13.2□□□□□ -0.3
UBXN4-201ENST00000272638 NRLP54845 237 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SPARCL1Q14515 664 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 XRRA1Q6P2D8 792 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 ABHD15Q6UXT9 468 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 ARMC9Q7Z3E5 817 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 PIK3R5Q8WYR1 880 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 AGAP3Q96P47 875 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 CEP41Q9BYV8 373 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 ECT2Q9H8V3 914 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SMCHD1A6NHR9 2005 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 TTC4O95801 387 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 STAG3L1P0CL83 205 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SLFN11Q7Z7L1 901 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 RASGEF1CQ8N431 466 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 ACAP3Q96P50 834 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 GPR88Q9GZN0 384 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SMYD3Q9H7B4 428 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SLC40A1Q9NP59 571 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 SMYD2Q9NRG4 433 aa13.2□□□□□ -0.3
UBXN4-201ENST00000272638 TPX2Q9ULW0 747 aaKnown RBP13.2□□□□□ -0.3
UBXN4-201ENST00000272638 MYH11P35749 1972 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 GH1P01241 217 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 KRT7P08729 469 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 MAP2K2P36507 400 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CCNA1P78396 465 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 PDE1BQ01064 536 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 TMEM132DQ14C87 1099 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 PLCB4Q15147 1175 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SURF1Q15526 300 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 TWF2Q6IBS0 349 aaKnown RBP13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SPATA21Q7Z572 469 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 KLRG1Q96E93 195 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 PPP1R12CQ9BZL4 782 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 C2orf40Q9H1Z8 148 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SMARCAD1Q9H4L7 1026 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 NPHS2Q9NP85 383 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 NINJ2Q9NZG7 142 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 BTBD7Q9P203 1132 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 TJP2Q9UDY2 1190 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 XPO7Q9UIA9 1087 aaKnown RBP13.19□□□□□ -0.3
UBXN4-201ENST00000272638 STXBP5LQ9Y2K9 1186 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 I3L4J1 428 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CES2O00748 559 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CTSHP09668 335 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SESN2P58004 480 aaPredicted RBP13.19□□□□□ -0.3
UBXN4-201ENST00000272638 METTL7BQ6UX53 244 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CEP128Q6ZU80 1094 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SAMD3Q8N6K7 520 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CAMKK2Q96RR4 588 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 ASNSD1Q9NWL6 643 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 STRIP2Q9ULQ0 834 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 PIN4Q9Y237 131 aaKnown RBP13.19□□□□□ -0.3
UBXN4-201ENST00000272638 NAV1Q8NEY1 1877 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 CYP1A2P05177 515 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 NFICP08651 508 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 PCK1P35558 622 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 RFC5P40937 340 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 WNT7BP56706 349 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 C15orf59Q2T9L4 293 aaPredicted RBP13.19□□□□□ -0.3
UBXN4-201ENST00000272638 SPOCD1Q6ZMY3 1216 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 DNAAF3Q8N9W5 541 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 LMO3Q8TAP4 145 aa13.19□□□□□ -0.3
UBXN4-201ENST00000272638 TRAPPC3O43617 180 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 KRT4P19013 534 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 TNFRSF8P28908 595 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 AUHQ13825 339 aaKnown RBP13.18□□□□□ -0.3
UBXN4-201ENST00000272638 C1orf220Q5T0J3 134 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 TRPM8Q7Z2W7 1104 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 KIRREL3Q8IZU9 778 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 MREGQ8N565 214 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 AGR3Q8TD06 166 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 SLC16A10Q8TF71 515 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 FAM129AQ9BZQ8 928 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 C12orf65Q9H3J6 166 aaKnown RBP13.18□□□□□ -0.3
UBXN4-201ENST00000272638 LRRC4Q9HBW1 653 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 CCT8L1PA6NM43 557 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 SPATA31C2B4DYI2 1134 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 MYL3P08590 195 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 TGFB2P61812 414 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 SNRPFP62306 86 aaKnown RBP13.18□□□□□ -0.3
UBXN4-201ENST00000272638 NOMO3P69849 1222 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 ROR1Q01973 937 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 NPNTQ6UXI9 565 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 C12orf29Q8N999 325 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 ERP27Q96DN0 273 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 MFSD14AQ96MC6 490 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 TMEM51Q9NW97 253 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 INPP5FQ9Y2H2 1132 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 PTPRJQ12913 1337 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 PPFIA2O75334 1257 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 MMRN1Q13201 1228 aa13.18□□□□□ -0.3
UBXN4-201ENST00000272638 KDELC2Q7Z4H8 507 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms