RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 TMEM259Q4ZIN3 620 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 SLC39A12Q504Y0 691 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 SCARA3Q6AZY7 606 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 SHC4Q6S5L8 630 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 GAREM2Q75VX8 874 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 METTL23Q86XA0 190 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 CCDC65Q8IXS2 484 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 THEM5Q8N1Q8 247 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 C1orf127Q8N9H9 656 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 GLIS3Q8NEA6 775 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 CXorf38Q8TB03 319 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 CACTINQ8WUQ7 758 aaKnown RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 DNASE1L2Q92874 299 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 IRF7Q92985 503 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 TRIM9Q9C026 710 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 LRRC27Q9C0I9 530 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 TNMDQ9H2S6 317 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 SEMA4AQ9H3S1 761 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 CUEDC2Q9H467 287 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 BRD9Q9H8M2 597 aa10.49□□□□□ -0.73
VPS41-201ENST00000265745 RBAKQ9NYW8 714 aaPredicted RBP10.49□□□□□ -0.73
VPS41-201ENST00000265745 GOLGA8IPA6NC78 632 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 GOLGA8JA6NMD2 632 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 HEPACAM2A8MVW5 462 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 MAN2B1O00754 1011 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 NCAM2O15394 837 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 CUTAO60888 179 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 FGF19O95750 216 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 SP9P0CG40 484 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 TARSP26639 723 aaKnown RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 POLR2BP30876 1174 aaKnown RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 GDI1P31150 447 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 HOXD13P35453 343 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 PNPLA4P41247 253 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 CDR1P51861 262 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 AMPD3Q01432 767 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 MGAT5BQ3V5L5 792 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 SV2CQ496J9 727 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 STXBP5Q5T5C0 1151 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 FOXD4L5Q5VV16 416 aaPredicted RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 CNNM4Q6P4Q7 775 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 ITIH5Q86UX2 942 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 ARID3BQ8IVW6 561 aaPredicted RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 MFSD6LQ8IWD5 586 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 ZNF687Q8N1G0 1237 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 CSGALNACT2Q8N6G5 542 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 IQUBQ8NA54 791 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 C2orf15Q8WU43 125 aaKnown RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 DEPDC1BQ8WUY9 529 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 FOXD4L4Q8WXT5 416 aaPredicted RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 HPS3Q969F9 1004 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 E2F7Q96AV8 911 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 RSPRY1Q96DX4 576 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 SEPT5Q99719 369 aaPredicted RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 MKNK1Q9BUB5 465 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 PCIF1Q9H4Z3 704 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 SLITRK6Q9H5Y7 841 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 PDE11AQ9HCR9 933 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 ZNF334Q9HCZ1 680 aaPredicted RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 AGAP1Q9UPQ3 857 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 MRPS17Q9Y2R5 130 aaKnown RBP10.48□□□□□ -0.73
VPS41-201ENST00000265745 R4GN57 208 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 DOCK6Q96HP0 2047 aa10.48□□□□□ -0.73
VPS41-201ENST00000265745 DMDP11532 3685 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ARNTLO00327 626 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ZNF263O14978 683 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 KIAA0391O15091 583 aaKnown RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 ITGB3P05106 788 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ZSCAN22P10073 491 aaPredicted RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 HAPLN1P10915 354 aaPredicted RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 ATF6P18850 670 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 GABRR2P28476 465 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 MAGEA9P43362 315 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 RPS9P46781 194 aaKnown RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 RBP5P82980 135 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 FCHO2Q0JRZ9 810 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 STXBP4Q6ZWJ1 553 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 EPM2AIP1Q7L775 607 aaPredicted RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 DCP1BQ8IZD4 617 aaKnown RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 ADSSL1Q8N142 457 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 GPD1LQ8N335 351 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 PDCL2Q8N4E4 241 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 LRRC52Q8N7C0 313 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 SPPL2BQ8TCT7 592 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 DHX58Q96C10 678 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 FAM84AQ96KN4 292 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ZNF560Q96MR9 790 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 LRRC3BQ96PB8 259 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 C7orf25Q9BPX7 421 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 LPIN3Q9BQK8 851 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ACBD6Q9BR61 282 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ATXN3LQ9H3M9 355 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 IL21Q9HBE4 155 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 TMLHEQ9NVH6 421 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 SPATA6Q9NWH7 488 aaPredicted RBP10.47□□□□□ -0.73
VPS41-201ENST00000265745 GDAP2Q9NXN4 497 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 SIX4Q9UIU6 781 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 FBXO4Q9UKT5 387 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 ITGA11Q9UKX5 1188 aa10.47□□□□□ -0.73
VPS41-201ENST00000265745 LHX6Q9UPM6 363 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms