RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DNAL1Q4LDG9 190 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 C18orf8Q96DM3 657 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 FAR2Q96K12 515 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PPP1R2P1Q96PQ5 205 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 KLC4Q9NSK0 619 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 FAM49BQ9NUQ9 324 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 EIF3LQ9Y262 564 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 GRID2IPA4D2P6 1211 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF200P98182 395 aaPredicted RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 LPIN1Q14693 890 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 DCAF6Q58WW2 860 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SPIRE2Q8WWL2 714 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SH3GLB1Q9Y371 365 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L10C9JJH3 530 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 NPEPPSP55786 919 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 MMRN1Q13201 1228 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SPATA21Q7Z572 469 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 RCOR2Q8IZ40 523 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PUS7LQ9H0K6 701 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 FANCEQ9HB96 536 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 DSG3P32926 999 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 STX12Q86Y82 276 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SNX9Q9Y5X1 595 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 C6orf222P0C671 652 aaPredicted RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 NME5P56597 212 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 WDR72Q3MJ13 1102 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 C12orf60Q5U649 245 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 GATAD2AQ86YP4 633 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 MICALL2Q8IY33 904 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 TFRCP02786 760 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PTK6Q13882 451 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ARL6IP4Q66PJ3 421 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 MDM1Q8TC05 714 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ARHGEF26Q96DR7 871 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 AGAP1Q9UPQ3 857 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM24O15164 1050 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF682O95780 498 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 CLUP10909 449 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SFSWAPQ12872 951 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 CDH24Q86UP0 819 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 MYH10P35580 1976 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PIK3C2GO75747 1445 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 AKAP5P24588 427 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 YWHABP31946 246 aaKnown RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PTK7Q13308 1070 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SLFNL1Q499Z3 407 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 OMA1Q96E52 524 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 DTNBP1Q96EV8 351 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ATP6V1G3Q96LB4 118 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 OXCT2Q9BYC2 517 aaPredicted RBP11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SHCBP1LQ9BZQ2 653 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 TRPC4Q9UBN4 977 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 FAM196BA6NMK8 535 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 PRKCBP05771 671 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF24P17028 368 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 TRIP10Q15642 601 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SGSM1Q2NKQ1 1148 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 SRLQ86TD4 932 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 B3GALNT2Q8NCR0 500 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 CAAP1Q9H8G2 361 aa11.84□□□□□ -0.51
PTPN4-201ENST00000263708 LONRF1Q17RB8 773 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 RESP18Q5W5W9 173 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ACAD9Q9H845 621 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MYOM2P54296 1465 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CYP26A1O43174 497 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 POLBP06746 335 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 WEE1P30291 646 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 PRCPP42785 496 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ALDH9A1P49189 494 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 KRR1Q13601 381 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 FBXO38Q6PIJ6 1188 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 FOXP4Q8IVH2 680 aaPredicted RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 KCNK16Q96T55 309 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 KATNAL1Q9BW62 490 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 VIPAS39Q9H9C1 493 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 DNALI1O14645 258 aaPredicted RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SMNDC1O75940 238 aaKnown RBP eCLIP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CPSF4O95639 269 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CYP4Z2PQ8N1L4 340 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SPATA18Q8TC71 538 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SENP7Q9BQF6 1050 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 COA1Q9GZY4 146 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 VTA1Q9NP79 307 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ABI2Q9NYB9 513 aaPredicted RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ENO4A6NNW6 628 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CASP1P29466 404 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 FOXP3Q9BZS1 431 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SAC3D1A6NKF1 404 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 POLRMTO00411 1230 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 GRK4P32298 578 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 TRIQKQ629K1 86 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ENOSF1Q7L5Y1 443 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 DHX40Q8IX18 779 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SNRNP27Q8WVK2 155 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 IL17RAQ96F46 866 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MASTLQ96GX5 879 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 EIF2AK1Q9BQI3 630 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 RSPH9Q9H1X1 276 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 227.3 ms