RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SNRPFP62306 86 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 FKBP1AP62942 108 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 SMAD1Q15797 465 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 MTDHQ86UE4 582 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 TRABD2AQ86V40 505 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 RFX6Q8HWS3 928 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 NIM1KQ8IY84 436 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 RCOR2Q8IZ40 523 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 PPP1R16BQ96T49 567 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 TIPINQ9BVW5 301 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 SLC38A10Q9HBR0 1119 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 WNT10BO00744 389 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 LIASO43766 372 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 STAM2O75886 525 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 UNC5CO95185 931 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 HMGCS2P54868 508 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 TAF1BQ53T94 588 aaPredicted RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 SPOCD1Q6ZMY3 1216 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 ZCCHC9Q8N567 271 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 IRAK4Q9NWZ3 460 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 CHMP2BQ9UQN3 213 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 GJA3Q9Y6H8 435 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 GARTP22102 1010 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 CTCFP49711 727 aaPredicted RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 TCEAL1Q15170 157 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 TNFAIP8L3Q5GJ75 292 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 SCYL3Q8IZE3 742 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ACTL9Q8TC94 416 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 MTMR12Q9C0I1 747 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ST6GALNAC4Q9H4F1 302 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 CHKBQ9Y259 395 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ZNF541Q9H0D2 1346 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 DKC1O60832 514 aaKnown RBP eCLIP13.31□□□□□ -0.281e-6■■□□□ 12.5
LIG1-201ENST00000263274 LYPLA2O95372 231 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 VNN1O95497 513 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 TROVE2P10155 538 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIG1-201ENST00000263274 TNFSF9P41273 254 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 MYL6P60660 151 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 CDO1Q16878 200 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ANKRD20A2Q5SQ80 823 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ANKRD20A1Q5TYW2 823 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ANKRD20A3Q5VUR7 823 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 STYK1Q6J9G0 422 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 TAS1R3Q7RTX0 852 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 KATNAL2Q8IYT4 538 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 LRRN4Q8WUT4 740 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 GRAMD1AQ96CP6 724 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 SLITRK1Q96PX8 696 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 MAK16Q9BXY0 300 aaKnown RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 YIPF3Q9GZM5 350 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 IQCGQ9H095 443 aaKnown RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 SCN9AQ15858 1988 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ATAD5Q96QE3 1844 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 HIRAP54198 1017 aaPredicted RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 OTUD4Q01804 1114 aaKnown RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 TMEM63BQ5T3F8 832 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ZNF677Q86XU0 584 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 VPS52Q8N1B4 723 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 TMEM35BQ8NCS4 154 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 ASAP3Q8TDY4 903 aa13.31□□□□□ -0.28
LIG1-201ENST00000263274 NSUN6Q8TEA1 469 aaKnown RBP13.31□□□□□ -0.28
LIG1-201ENST00000263274 ENTPD5O75356 428 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 C4BPAP04003 597 aaKnown RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 GCLCP48506 637 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 IRX4P78413 519 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 KLF1Q13351 362 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 NIPA1Q7RTP0 329 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 NLRP9Q7RTR0 991 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 FAM71DQ8N9W8 422 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 KCTD6Q8NC69 237 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 MAGEC3Q8TD91 643 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 DTX3LQ8TDB6 740 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 MAML1Q92585 1016 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 SLCO2A1Q92959 643 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 MCUR1Q96AQ8 359 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 PPP1R12CQ9BZL4 782 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 ARHGEF3Q9NR81 526 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 NKX1-2Q9UD57 310 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 CNTNAP1P78357 1384 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 DCTN3O75935 186 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 MT-ND3P03897 115 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 CYP1A1P04798 512 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 TMEM191BP0C7N4 346 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 CPA2P48052 419 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 GALNTL6Q49A17 601 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 MDH1BQ5I0G3 518 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 ANKRD22Q5VYY1 191 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 SCYL2Q6P3W7 929 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 CRELD2Q6UXH1 353 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 APBB1IPQ7Z5R6 666 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 CCDC125Q86Z20 511 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 SAMD3Q8N6K7 520 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 FBXO36Q8NEA4 188 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 ZNF483Q8TF39 744 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 C7orf43Q8WVR3 580 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 ZNF75CPQ92670 426 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 TBC1D10AQ9BXI6 508 aa13.3□□□□□ -0.28
LIG1-201ENST00000263274 PSMC3IPQ9P2W1 217 aaPredicted RBP13.3□□□□□ -0.28
LIG1-201ENST00000263274 C10orf71Q711Q0 1435 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms