RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ACAD10Q6JQN1 1059 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ZCCHC23Q6ZST2 131 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 HSD17B14Q9BPX1 270 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 RGPD3A6NKT7 1758 aaPredicted RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 RGPD4Q7Z3J3 1758 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 DCAF8L1A6NGE4 600 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 ABLIM1O14639 778 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 ZWINTO95229 277 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 ARP10275 920 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 NSFP46459 744 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 GPX6P59796 221 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 SLC25A3Q00325 362 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 CDC16Q13042 620 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 PAOXQ6QHF9 649 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 STXBP4Q6ZWJ1 553 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 OTOP1Q7RTM1 612 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 CTAGE3PQ8IX95 158 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 PALM2Q8IXS6 379 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 LRRN4Q8WUT4 740 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 OXNAD1Q96HP4 312 aaPredicted RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 ECSITQ9BQ95 431 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 TIPINQ9BVW5 301 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 AMNQ9BXJ7 453 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 DMAC2Q9NW81 257 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 UVRAGQ9P2Y5 699 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 CYB561D2O14569 222 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 EIF3DO15371 548 aaKnown RBP eCLIP15.1■□□□□ 0.014e-8■■■□□ 16.7
SDC1-201ENST00000254351 ECE2O60344 883 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 TM4SF1P30408 202 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 HADHBP55084 474 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 TMEM62Q0P6H9 643 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 TMED1Q13445 227 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 FNBP1LQ5T0N5 605 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 PADI6Q6TGC4 694 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 PRPF39Q86UA1 669 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 DAW1Q8N136 415 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 XXYLT1Q8NBI6 393 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 PDP2Q9P2J9 529 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 LAMB1P07942 1786 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 PRPF4O43172 522 aaKnown RBP eCLIP15.1■□□□□ 0.012e-7■■□□□ 13.9
SDC1-201ENST00000254351 CIB2O75838 187 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 MT-ND3P03897 115 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 GZMAP12544 262 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 HOXA7P31268 230 aaPredicted RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 RPL7AP62424 266 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 CAV1Q03135 178 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 MFSD7Q6UXD7 560 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 SPATA24Q86W54 205 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 SCUBE1Q8IWY4 988 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 VCX3BQ9H321 246 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 KCNK13Q9HB14 408 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 VCX3AQ9NNX9 186 aa15.1■□□□□ 0.01
SDC1-201ENST00000254351 CHCHD3Q9NX63 227 aaKnown RBP15.1■□□□□ 0.01
SDC1-201ENST00000254351 TRAFD1O14545 582 aaPredicted RBP15.09■□□□□ 0.01
SDC1-201ENST00000254351 TCEA3O75764 348 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 TOP3BO95985 862 aaKnown RBP15.09■□□□□ 0.01
SDC1-201ENST00000254351 GLRA2P23416 452 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 SERPINB6P35237 376 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 GRIA2P42262 883 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 GEMIN4P57678 1058 aaKnown RBP15.09■□□□□ 0.01
SDC1-201ENST00000254351 NCOA4Q13772 614 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 DOK7Q18PE1 504 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 KCNT1Q5JUK3 1230 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 MTBPQ96DY7 904 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 TMX4Q9H1E5 349 aaPredicted RBP15.09■□□□□ 0.01
SDC1-201ENST00000254351 CYLDQ9NQC7 956 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 SAR1AQ9NR31 198 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 ACTL7BQ9Y614 415 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 MYH11P35749 1972 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 TCRBV7S3A2A0A539 114 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 KRT1P04264 644 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 CDK16Q00536 496 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 ZNF394Q53GI3 561 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 CENPUQ71F23 418 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 NLRX1Q86UT6 975 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 FBXO36Q8NEA4 188 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 CCDC110Q8TBZ0 833 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 CENPKQ9BS16 269 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 DNAAF2Q9NVR5 837 aaKnown RBP15.09■□□□□ 0.01
SDC1-201ENST00000254351 SLC7A8Q9UHI5 535 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 RPS6KL1Q9Y6S9 549 aa15.09■□□□□ 0.01
SDC1-201ENST00000254351 F5H6K3 240 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 TLR3O15455 904 aaKnown RBP15.08■□□□□ 0.01
SDC1-201ENST00000254351 AVILO75366 819 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 KLRC2P26717 231 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 BASP1P80723 227 aaKnown RBP15.08■□□□□ 0.01
SDC1-201ENST00000254351 DLG1Q12959 904 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 HIF1AQ16665 826 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 MCOLN2Q8IZK6 566 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 CEP70Q8NHQ1 597 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 BICD1Q96G01 975 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 SERAC1Q96JX3 654 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 FAM20AQ96MK3 541 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 NAP1L4Q99733 375 aaKnown RBP15.08■□□□□ 0.01
SDC1-201ENST00000254351 ZNF577Q9BSK1 485 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 IQCGQ9H095 443 aaKnown RBP15.08■□□□□ 0.01
SDC1-201ENST00000254351 UNC45AQ9H3U1 944 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 ANGPTL2Q9UKU9 493 aa15.08■□□□□ 0.01
SDC1-201ENST00000254351 AK5Q9Y6K8 562 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms