RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IQCF3P0C7M6 154 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 ALADP13716 330 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 CD1EP15812 388 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 DPEP1P16444 411 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 CPA2P48052 419 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 CLNS1AP54105 237 aaKnown RBP11.29□□□□□ -0.6
USP28-201ENST00000003302 TAOK1Q7L7X3 1001 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 LPIN3Q9BQK8 851 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 RXFP1Q9HBX9 757 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 ARMCX1Q9P291 453 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 ARL2BPQ9Y2Y0 163 aa11.29□□□□□ -0.6
USP28-201ENST00000003302 TYROBPO43914 113 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 FAM189A1O60320 539 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 KRT1P04264 644 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 KRT15P19012 456 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 CA4P22748 312 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 MMP8P22894 467 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 PTPN20Q4JDL3 420 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 MDH1BQ5I0G3 518 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 RNASEH2BQ5TBB1 312 aaKnown RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 TRIM68Q6AZZ1 485 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 DENND1BQ6P3S1 775 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 BZW1Q7L1Q6 419 aaKnown RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 FAM160B2Q86V87 743 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 SAMD3Q8N6K7 520 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 FAM13CQ8NE31 585 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ACTL9Q8TC94 416 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 DEFB129Q9H1M3 183 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 LOXHD1Q8IVV2 1947 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 RGPD3A6NKT7 1758 aaPredicted RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 RGPD4Q7Z3J3 1758 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 CDH16O75309 829 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 GGPS1O95749 300 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 HSPA6P17066 643 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ANKRD20A2Q5SQ80 823 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ANKRD20A1Q5TYW2 823 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ANKRD20A3Q5VUR7 823 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ATG14Q6ZNE5 492 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 MTDHQ86UE4 582 aaKnown RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 GIMAP7Q8NHV1 300 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 PLAC1Q9HBJ0 212 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 UBN1Q9NPG3 1134 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TCEAL9Q9UHQ7 104 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 PARP14Q460N5 1801 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TMEM191CA6NGB0 347 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ZBED4O75132 1171 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 LGR5O75473 907 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 UNC5CO95185 931 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TMEM191BP0C7N4 346 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 FKBP1AP62942 108 aaKnown RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 EMC2Q15006 297 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 CCNG2Q16589 344 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TAF1BQ53T94 588 aaPredicted RBP11.28□□□□□ -0.6
USP28-201ENST00000003302 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 LVRNQ6Q4G3 990 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ABHD15Q6UXT9 468 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 DPH6Q7L8W6 267 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ARMC9Q7Z3E5 817 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 PHC3Q8NDX5 983 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 CPT1BQ92523 772 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 FNBP1Q96RU3 617 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TBC1D10AQ9BXI6 508 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 TBC1D22BQ9NU19 505 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 SLC5A4Q9NY91 659 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 ZNRF3Q9ULT6 936 aa11.28□□□□□ -0.6
USP28-201ENST00000003302 FAM47DPA6NHR8 397 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 SGK1O00141 431 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 CYB561D2O14569 222 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 PEX11AO75192 247 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 SUN1O94901 812 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 GAS8O95995 478 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 CDKN2BP42772 138 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 NCOA4Q13772 614 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 CAPSQ13938 189 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 CCDC142Q17RM4 750 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 CTC1Q2NKJ3 1217 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 RHOT1Q8IXI2 618 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 ROPN1BQ9BZX4 212 aaPredicted RBP11.27□□□□□ -0.6
USP28-201ENST00000003302 C20orf27Q9GZN8 174 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 SDCBP2Q9H190 292 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 DENND2DQ9H6A0 471 aaPredicted RBP11.27□□□□□ -0.6
USP28-201ENST00000003302 ROPN1Q9HAT0 212 aaPredicted RBP11.27□□□□□ -0.6
USP28-201ENST00000003302 JPH1Q9HDC5 661 aaPredicted RBP11.27□□□□□ -0.6
USP28-201ENST00000003302 MYOZ2Q9NPC6 264 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 PARP2Q9UGN5 583 aa11.27□□□□□ -0.6
USP28-201ENST00000003302 HCRTO43612 131 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 SESN3P58005 492 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 PPP2R5EQ16537 467 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 UNC5BQ8IZJ1 945 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 ZCCHC9Q8N567 271 aaKnown RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 REPS2Q8NFH8 660 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 C10orf82Q8WW14 230 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 SERAC1Q96JX3 654 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 PEBP4Q96S96 227 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 CPXM1Q96SM3 734 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 NXF1Q9UBU9 619 aaKnown RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 STK24Q9Y6E0 443 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 EME2A4GXA9 379 aaPredicted RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 DNALI1O14645 258 aaPredicted RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 SRGAP2CP0DJJ0 459 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms