RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RHPN2P1A8MT19 583 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 E7EVH7 732 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TADA2AO75478 443 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 UBL4AP11441 157 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 HNF1AP20823 631 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 MCM7P33993 719 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 STX1BP61266 288 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TCP11X2Q5H9J9 407 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SNX29Q8TEQ0 813 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TCF12Q99081 682 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC2Q9BYS8 371 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RIBC2Q9H4K1 309 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 SDHAF3Q9NRP4 125 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 HPS5Q9UPZ3 1129 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 V9GY48 417 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RTTNQ86VV8 2226 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PPL8 197 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 MAGEB3O15480 346 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ALDH4A1P30038 563 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 NAA20P61599 178 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TNNC1P63316 161 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PDIA2Q13087 525 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 NIM1KQ8IY84 436 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ING5Q8WYH8 240 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 VPS4AQ9UN37 437 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PCDHGB2Q9Y5G2 931 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 C1orf232A0A0U1RR37 186 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 RNMTO43148 476 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FBXO21O94952 628 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PPP1R15BQ5SWA1 713 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PEX26Q7Z412 305 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 HORMAD1Q86X24 394 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 MAML2Q8IZL2 1156 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ART5Q96L15 291 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 EYA3Q99504 573 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 FAM204AQ9H8W3 233 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ARMT1Q9H993 441 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 ADAMTS1Q9UHI8 967 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 DOCK10Q96BY6 2186 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 NAV1Q8NEY1 1877 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HGSO14964 777 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CLOCKO15516 846 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SRGAP2O75044 1071 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM27P14373 513 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 XPAP23025 273 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RNASELQ05823 741 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NIPAL4Q0D2K0 466 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SGCGQ13326 291 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 BFSP2Q13515 415 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OR8H3Q8N146 312 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 LILRB4Q8NHJ6 448 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 KIAA1683Q9H0B3 1180 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CYP4F12Q9HCS2 524 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 BAG5Q9UL15 447 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 AP4E1Q9UPM8 1137 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 WWP2O00308 870 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SNAP29O95721 258 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HOXA10P31260 410 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NKX2-5P52952 324 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OXCT1P55809 520 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GRM3Q14832 879 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM16LQ309B1 348 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SGO2Q562F6 1265 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 FAM209BQ5JX69 171 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 KIAA1614Q5VZ46 1190 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MTHFD1LQ6UB35 978 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TOM1L2Q6ZVM7 507 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC8DQ7L1W4 858 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 FSIP1Q8NA03 581 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ZBTB44Q8NCP5 570 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TBC1D32Q96NH3 1257 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 UBAC1Q9BSL1 405 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RNF32Q9H0A6 362 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TPK1Q9H3S4 243 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MRPL47Q9HD33 250 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM3O75382 744 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 ALOX5P09917 674 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 FGFR3P22607 806 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TLX1P31314 330 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GUCY1A2P33402 732 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 LIG4P49917 911 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GATMP50440 423 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PPP2R2DQ66LE6 453 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 IQSEC1Q6DN90 963 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM54Q9BYV2 358 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SHCBP1LQ9BZQ2 653 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 NAPBQ9H115 298 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SMARCAD1Q9H4L7 1026 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HCN4Q9Y3Q4 1203 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 HBS1LQ9Y450 684 aaKnown RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GSAPA4D1B5 854 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SOCS7O14512 581 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 PDE8AO60658 829 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 CCNKO75909 580 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MFN2O95140 757 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 GZMAP12544 262 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 OSBPP22059 807 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 MXD4Q14582 209 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-221ENST00000641996 SH3D19Q5HYK7 790 aa3.73□□□□□ -1.81
SCN1A-221ENST00000641996 RC3H1Q5TC82 1133 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms