RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ARHGEF25Q86VW2 580 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ATP11CQ8NB49 1132 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC51Q96ER9 411 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC28BQ9BUN5 200 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 NPLQ9BXD5 320 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 SPRTNQ9H040 489 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 HIPK2Q9H2X6 1198 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 METTL14Q9HCE5 456 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 INTS9Q9NV88 658 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RNF181Q9P0P0 153 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RPS6KA6Q9UK32 745 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 EXOC6BQ9Y2D4 811 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 DTNAQ9Y4J8 743 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ACACBO00763 2458 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 VEGFDO43915 354 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D4O60343 1298 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CTNND1O60716 968 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ALDH1L1O75891 902 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL18O94889 574 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CPP00450 1065 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PLS3P13797 630 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 THOP1P52888 689 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ACTR2P61160 394 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TFAP4Q01664 338 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ACAP2Q15057 778 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF18Q6ZSZ5 1173 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RFX8Q6ZV50 586 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 MCEMP1Q8IX19 187 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 SERBP1Q8NC51 408 aaKnown RBP eCLIP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF555Q8NEP9 628 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 DCAF5Q96JK2 942 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 BRIP1Q9BX63 1249 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 FAM117AQ9C073 453 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PPP1R14DQ9NXH3 145 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KIAA1468Q9P260 1216 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM33Q9UPN9 1127 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TDRD9Q8NDG6 1382 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZFYVE26Q68DK2 2539 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA31A6Q5VVP1 1343 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KERAO60938 352 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 BBOX1O75936 387 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CYP17A1P05093 508 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MYCLP12524 364 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TAC1P20366 129 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PTDSS1P48651 473 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FOXK1P85037 733 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 EFTUD2Q15029 972 aaKnown RBP eCLIP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CERKLQ49MI3 558 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CRLF3Q8IUI8 442 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KSR1Q8IVT5 923 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 LGI2Q8N0V4 545 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TTC30BQ8N4P2 665 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC185Q8N715 623 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 DDHD1Q8NEL9 900 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CHST13Q8NET6 341 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SNIP1Q8TAD8 396 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CYGBQ8WWM9 190 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZBTB10Q96DT7 871 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA7Q9P0W8 599 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHB4Q9Y5E5 795 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZBTB39O15060 712 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TOM1L1O75674 476 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PPM1AP35813 382 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RAB2AP61019 212 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TTLL9Q3SXZ7 439 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 DHX58Q96C10 678 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FAF2Q96CS3 445 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 VPS35Q96QK1 796 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CLEC4MQ9H2X3 399 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM245Q9H330 911 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF556Q9HAH1 456 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 BATF3Q9NR55 127 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 C1orf112Q9NSG2 853 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 GINM1Q9NU53 330 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGEF12Q9NZN5 1544 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 KIAA1107Q9UPP5 1409 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MYO1GB0I1T2 1018 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SNPHO15079 494 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SPTLC2O15270 562 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 CFLARO15519 480 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PJA2O43164 708 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PDE8AO60658 829 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 ECM2O94769 699 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 VCPP55072 806 aaKnown RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 FANCCQ00597 558 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SP4Q02446 784 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 RUNX1T1Q06455 604 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PPIL2Q13356 520 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 SNAPC2Q13487 334 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 STXBP2Q15833 593 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 OCLNQ16625 522 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PKDCCQ504Y2 493 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TRPM8Q7Z2W7 1104 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 PCGF5Q86SE9 256 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MPP5Q8N3R9 675 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 TM9SF4Q92544 642 aa2.9□□□□□ -1.95
SCN1A-219ENST00000641575 C18orf25Q96B23 403 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-219ENST00000641575 MASTLQ96GX5 879 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms