RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HOXC13P31276 330 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 LSP1P33241 339 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 FLT3P36888 993 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ME1P48163 572 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ALDH9A1P49189 494 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 POU6F2P78424 691 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 GTF2H3Q13889 308 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 PDCD1Q15116 288 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 DACT2Q5SW24 774 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 BSPRYQ5W0U4 402 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 CDCA2Q69YH5 1023 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 ZNF324BQ6AW86 544 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 PDXDC1Q6P996 788 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 FAM180AQ6UWF9 173 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 FRMD7Q6ZUT3 714 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 UBE2R2Q712K3 238 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 FAM9AQ8IZU1 332 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 PQLC1Q8N2U9 271 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 GALNT4Q8N4A0 578 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ARFGAP1Q8N6T3 406 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ATRIPQ8WXE1 791 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 STON2Q8WXE9 905 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 HOXB13Q92826 284 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 CUL5Q93034 780 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 WBP2Q969T9 261 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 FKBP10Q96AY3 582 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 CYFIP2Q96F07 1278 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 LRIG1Q96JA1 1093 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 ZNF479Q96JC4 524 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 SLITRK1Q96PX8 696 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 OSBPL9Q96SU4 736 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 TMEM204Q9BSN7 226 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 LANCL2Q9NS86 450 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 TMEM140Q9NV12 185 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 IFT57Q9NWB7 429 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 DLL3Q9NYJ7 618 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 H2AFY2Q9P0M6 372 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 KIAA1522Q9P206 1035 aaPredicted RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 KLHL13Q9P2N7 655 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 DNMT3BQ9UBC3 853 aaKnown RBP0.87□□□□□ -2.27
VPS35-212ENST00000640313 DKK3Q9UBP4 350 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 HEY2Q9UBP5 337 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 NR2E3Q9Y5X4 410 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 HS3ST3B1Q9Y662 390 aa0.87□□□□□ -2.27
VPS35-212ENST00000640313 A0A0B4J269 797 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 QSOX1O00391 747 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 SPRY2O43597 315 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TRIAP1O43715 76 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 OPA1O60313 960 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 DNAJC8O75937 253 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 USP1O94782 785 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 CAMTA2O94983 1202 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 F2P00734 622 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 A1BGP04217 495 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 NGFRP08138 427 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 FGF3P11487 239 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 FPR1P21462 350 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TNFRSF8P28908 595 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 PCSK1P29120 753 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 KRT2P35908 639 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 NPTX2P47972 431 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TAF6P49848 677 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 MFAP1P55081 439 aaKnown RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 LGALS4P56470 323 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 PER3P56645 1201 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 EEFSECP57772 596 aaKnown RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 CYP4F2P78329 520 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 MC2RQ01718 297 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 DSG1Q02413 1049 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 GHRHRQ02643 423 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TUBB3Q13509 450 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 ZNF460Q14592 562 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TERF2Q15554 542 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TBCCQ15814 346 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 MRGPRG-AS1Q2M3A8 158 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 KRTAP24-1Q3LI83 254 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 CERKLQ49MI3 558 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 PREPLQ4J6C6 727 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 FNDC3BQ53EP0 1204 aaKnown RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 PCID2Q5JVF3 399 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TEDDM1Q5T9Z0 273 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 TRIM72Q6ZMU5 477 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 COLCA1Q6ZS62 124 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 MAVSQ7Z434 540 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 ZSWIM2Q8NEG5 633 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 GADD45GIP1Q8TAE8 222 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 MPLKIPQ8TAP9 179 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 POC1BQ8TC44 478 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 ZNF398Q8TD17 642 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 ZFYVE19Q96K21 471 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 CLUHP3Q96NS8 147 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 SIGLEC11Q96RL6 698 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 UHRF1Q96T88 793 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 TLR10Q9BXR5 811 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 KCTD10Q9H3F6 313 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 PI4KBQ9UBF8 816 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 SCOCQ9UIL1 159 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 AJAP1Q9UKB5 411 aaPredicted RBP0.86□□□□□ -2.27
VPS35-212ENST00000640313 SH2B3Q9UQQ2 575 aa0.86□□□□□ -2.27
VPS35-212ENST00000640313 ACTL7AQ9Y615 435 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms