RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-225ENST00000638144 ATF2P15336 505 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 ELF1P32519 619 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 STX17P56962 302 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 MYO1EQ12965 1108 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 TRPC3Q13507 836 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 MORC3Q14149 939 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 SOWAHAQ2M3V2 549 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 ANKRD40Q6AI12 368 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 SCARA5Q6ZMJ2 495 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 LRRTM3Q86VH5 581 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 RNF135Q8IUD6 432 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 ADGRF2Q8IZF7 708 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 MMS19Q96T76 1030 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 LMBRD1Q9NUN5 540 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 AFF4Q9UHB7 1163 aaKnown RBP13.45□□□□□ -0.26
CLN6-225ENST00000638144 SLC27A5Q9Y2P5 690 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 YIPF1Q9Y548 306 aa13.45□□□□□ -0.26
CLN6-225ENST00000638144 PPP1R3GB7ZBB8 358 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 NRG2O14511 850 aaPredicted RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 C1RP00736 705 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 LRG1P02750 347 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 ASGR2P07307 311 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 HNRNPA1P09651 372 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLN6-225ENST00000638144 RPL13P26373 211 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 GBP2P32456 591 aaPredicted RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 RAP1GAPP47736 663 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 GCLMP48507 274 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 VAMP7P51809 220 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 PPP3CAQ08209 521 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 TWF1Q12792 350 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 DUSP4Q13115 394 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 MYBPC2Q14324 1141 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 NFIL3Q16649 462 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 EDRF1Q3B7T1 1238 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 TPGS2Q68CL5 300 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 CENPPQ6IPU0 288 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 CLEC17AQ6ZS10 378 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 ELOA2Q8IYF1 753 aaPredicted RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 TCEAL8Q8IYN2 117 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 TDRD5Q8NAT2 981 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 STKLD1Q8NE28 680 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 KBTBD7Q8WVZ9 684 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 NELFBQ8WX92 580 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 ING5Q8WYH8 240 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 MYADMQ96S97 322 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 TSG101Q99816 390 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 MRPL45Q9BRJ2 306 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 ZCWPW1Q9H0M4 648 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 XYLT2Q9H1B5 865 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 CLSTN2Q9H4D0 955 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 EPHX3Q9H6B9 360 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 SMYD3Q9H7B4 428 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 WDR6Q9NNW5 1121 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 TMLHEQ9NVH6 421 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 GDAP2Q9NXN4 497 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 DDX43Q9NXZ2 648 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 DNMT3BQ9UBC3 853 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 NXF1Q9UBU9 619 aaKnown RBP13.44□□□□□ -0.26
CLN6-225ENST00000638144 DSEQ9UL01 958 aa13.44□□□□□ -0.26
CLN6-225ENST00000638144 ARHGEF37A1IGU5 675 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 FAM86C2PA6NEL3 165 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 PSMA7O14818 248 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 ATP2C2O75185 946 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 XYLBO75191 536 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 LRRN2O75325 713 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 C4BPAP04003 597 aaKnown RBP13.43□□□□□ -0.26
CLN6-225ENST00000638144 KRT13P13646 458 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 PAX3P23760 479 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 CCNE1P24864 410 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 HOXA9P31269 272 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 PSMC2P35998 433 aaKnown RBP13.43□□□□□ -0.26
CLN6-225ENST00000638144 PSMC1P62191 440 aaKnown RBP13.43□□□□□ -0.26
CLN6-225ENST00000638144 GPR17Q13304 367 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 STIM1Q13586 685 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 NCOA4Q13772 614 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 SLC5A9Q2M3M2 681 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 ZNF699Q32M78 642 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 WDR72Q3MJ13 1102 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 COBLL1Q53SF7 1204 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 SPOPLQ6IQ16 392 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 SV2AQ7L0J3 742 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 HS6ST3Q8IZP7 471 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 THEM5Q8N1Q8 247 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 TOP6BLQ8N6T0 577 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 ITFG1Q8TB96 612 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 TMC2Q8TDI7 906 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 TMEM174Q8WUU8 243 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 GBP4Q96PP9 640 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 SEPT5Q99719 369 aaPredicted RBP13.43□□□□□ -0.26
CLN6-225ENST00000638144 LPIN3Q9BQK8 851 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 CORO1BQ9BR76 489 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 PI4K2AQ9BTU6 479 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 RHOBTB2Q9BYZ6 727 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 SMOC2Q9H3U7 446 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 ABI2Q9NYB9 513 aaPredicted RBP13.43□□□□□ -0.26
CLN6-225ENST00000638144 CEP72Q9P209 647 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 KIAA1468Q9P260 1216 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 LIMD1Q9UGP4 676 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 NR2E1Q9Y466 385 aa13.43□□□□□ -0.26
CLN6-225ENST00000638144 NME7Q9Y5B8 376 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms