RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GKN1Q9NS71 199 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 THG1LQ9NWX6 298 aaKnown RBP17.83■□□□□ 0.44
CLN3-264ENST00000637985 ANKFY1Q9P2R3 1169 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 SPAARA0A1B0GVQ0 90 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 LIG1P18858 919 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 HMGN5P82970 282 aaKnown RBP17.82■□□□□ 0.44
CLN3-264ENST00000637985 DUSP4Q13115 394 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 RUNX3Q13761 415 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 NT5DC1Q5TFE4 455 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 ATF7IP2Q5U623 682 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 DNAJB7Q7Z6W7 309 aaPredicted RBP17.82■□□□□ 0.44
CLN3-264ENST00000637985 PIP4P1Q86T03 277 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 C11orf74Q86VG3 221 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 HPS4Q9NQG7 708 aa17.82■□□□□ 0.44
CLN3-264ENST00000637985 TOPORSQ9NS56 1045 aaPredicted RBP17.82■□□□□ 0.44
CLN3-264ENST00000637985 EVLQ9UI08 416 aaPredicted RBP17.82■□□□□ 0.44
CLN3-264ENST00000637985 H0Y626 953 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 TRIM16O95361 564 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 FGF19O95750 216 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 KCNE1P15382 129 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 ATP2B1P20020 1258 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 DRD1P21728 446 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 GRM5P41594 1212 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 TXKP42681 527 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 NAMPTP43490 491 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 YARSP54577 528 aaKnown RBP17.81■□□□□ 0.44
CLN3-264ENST00000637985 SIM1P81133 766 aaPredicted RBP17.81■□□□□ 0.44
CLN3-264ENST00000637985 COL28A1Q2UY09 1125 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 FBXO43Q4G163 708 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 ARHGAP15Q53QZ3 475 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 CYP2U1Q7Z449 544 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 CEP120Q8N960 986 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 DEPTORQ8TB45 409 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 PSMG2Q969U7 264 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 TBC1D32Q96NH3 1257 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 PGLYRP2Q96PD5 576 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 BBC3Q96PG8 261 aaPredicted RBP17.81■□□□□ 0.44
CLN3-264ENST00000637985 FOXP1Q9H334 677 aaPredicted RBP17.81■□□□□ 0.44
CLN3-264ENST00000637985 TASP1Q9H6P5 420 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 PCDHB8Q9UN66 801 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 INVSQ9Y283 1065 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 ASB3Q9Y575 518 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 MAST4O15021 2626 aa17.81■□□□□ 0.44
CLN3-264ENST00000637985 UPK3BL1B0FP48 263 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 UPK3BL2E5RIL1 263 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 WNT7AO00755 349 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 OAZ2O95190 189 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 GABRR2P28476 465 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 MCM4P33991 863 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 ALDH1A3P47895 512 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 GALK1P51570 392 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 GUCY1B3Q02153 619 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 LMAN2Q12907 356 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 ORC2Q13416 577 aaPredicted RBP17.8■□□□□ 0.44
CLN3-264ENST00000637985 DMC1Q14565 340 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 APBB1IPQ7Z5R6 666 aaPredicted RBP17.8■□□□□ 0.44
CLN3-264ENST00000637985 FAM184AQ8NB25 1140 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 FBXO18Q8NFZ0 1043 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 RPLP0P6Q8NHW5 317 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 C18orf25Q96B23 403 aaPredicted RBP17.8■□□□□ 0.44
CLN3-264ENST00000637985 EBF3Q9H4W6 596 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 TNFSF13BQ9Y275 285 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 BPTFQ12830 3046 aa17.8■□□□□ 0.44
CLN3-264ENST00000637985 OR4Q2P0C623 313 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 DGKEP52429 567 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 AMPD2Q01433 879 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 SEMA3BQ13214 749 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 GPR17Q13304 367 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 USP39Q53GS9 565 aaKnown RBP17.79■□□□□ 0.44
CLN3-264ENST00000637985 CENPPQ6IPU0 288 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 CHCHD4Q8N4Q1 142 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 POLR3CQ9BUI4 534 aaPredicted RBP17.79■□□□□ 0.44
CLN3-264ENST00000637985 KIFC3Q9BVG8 833 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 CCDC94Q9BW85 323 aaPredicted RBP17.79■□□□□ 0.44
CLN3-264ENST00000637985 OXCT2Q9BYC2 517 aaPredicted RBP17.79■□□□□ 0.44
CLN3-264ENST00000637985 SMG9Q9H0W8 520 aaKnown RBP17.79■□□□□ 0.44
CLN3-264ENST00000637985 SLC27A5Q9Y2P5 690 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 ACACAQ13085 2346 aa17.79■□□□□ 0.44
CLN3-264ENST00000637985 PI4KAP42356 2102 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 SPATA31C1P0DKV0 1188 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 BCKDHBP21953 392 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 MARCKSP29966 332 aaPredicted RBP17.78■□□□□ 0.44
CLN3-264ENST00000637985 MCM7P33993 719 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 RDXP35241 583 aaKnown RBP17.78■□□□□ 0.44
CLN3-264ENST00000637985 EFNA5P52803 228 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 YWHAHQ04917 246 aaPredicted RBP17.78■□□□□ 0.44
CLN3-264ENST00000637985 SCAPQ12770 1279 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 TRIM61Q5EBN2 209 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 TRIM68Q6AZZ1 485 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 PIGKQ92643 395 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 EZH1Q92800 747 aaPredicted RBP17.78■□□□□ 0.44
CLN3-264ENST00000637985 ACDQ96AP0 544 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 P2RY13Q9BPV8 354 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 SLC46A2Q9BY10 475 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 TMEM60Q9H2L4 133 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 PTPRHQ9HD43 1115 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 CNTN3Q9P232 1028 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 TBX20Q9UMR3 447 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 GON4LQ3T8J9 2241 aa17.78■□□□□ 0.44
CLN3-264ENST00000637985 M0QZQ0 153 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms