RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SENP8Q96LD8 212 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 RPF1Q9H9Y2 349 aaKnown RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 LARSQ9P2J5 1176 aaKnown RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.06■□□□□ 0.96
CLN3-262ENST00000637699 CHD8Q9HCK8 2581 aa21.06■□□□□ 0.96
CLN3-262ENST00000637699 PRAMEF12O95522 483 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 FGF19O95750 216 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 ODC1P11926 461 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 KCNA4P22459 653 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 NCKAP1LP55160 1127 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 LILRA4P59901 499 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 CYP4F8P98187 520 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 TNK2Q07912 1038 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 ITIH5Q86UX2 942 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 FAM160A2Q8N612 972 aaPredicted RBP21.05■□□□□ 0.96
CLN3-262ENST00000637699 SEPT5Q99719 369 aaPredicted RBP21.05■□□□□ 0.96
CLN3-262ENST00000637699 LPIN3Q9BQK8 851 aa21.05■□□□□ 0.96
CLN3-262ENST00000637699 SH2B1Q9NRF2 756 aaPredicted RBP21.05■□□□□ 0.96
CLN3-262ENST00000637699 SDK1Q7Z5N4 2213 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 H0YCG3 227 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 HNRNPDLO14979 420 aaKnown RBP21.04■□□□□ 0.96
CLN3-262ENST00000637699 OGTO15294 1046 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 CCINQ13939 588 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 KYAT1Q16773 422 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 ARSHQ5FYA8 562 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 SPATA1Q5VX52 437 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 MCTP1Q6DN14 999 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 JADE1Q6IE81 842 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 BPIFB1Q8TDL5 484 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 OBP2AQ9NY56 170 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 KCND2Q9NZV8 630 aa21.04■□□□□ 0.96
CLN3-262ENST00000637699 MAP1BP46821 2468 aaKnown RBP21.03■□□□□ 0.96
CLN3-262ENST00000637699 VWA3AA6NCI4 1184 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 FAM189A1O60320 539 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 ATP2C1P98194 919 aaPredicted RBP21.03■□□□□ 0.96
CLN3-262ENST00000637699 MGAT5BQ3V5L5 792 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 SLC39A12Q504Y0 691 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 OR10T2Q8NGX3 314 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 MSTO1Q9BUK6 570 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 SMG9Q9H0W8 520 aaKnown RBP21.03■□□□□ 0.96
CLN3-262ENST00000637699 TASP1Q9H6P5 420 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 TBX20Q9UMR3 447 aa21.03■□□□□ 0.96
CLN3-262ENST00000637699 AXIN1O15169 862 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 EXTL3O43909 919 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 PLCB2Q00722 1185 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 DHX8Q14562 1220 aaKnown RBP21.02■□□□□ 0.96
CLN3-262ENST00000637699 VEPH1Q14D04 833 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 ST3GAL2Q16842 350 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 ITPRIPL2Q3MIP1 535 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 C9orf57Q5W0N0 161 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 WDR5BQ86VZ2 330 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 SYNPOQ8N3V7 929 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 KCTD17Q8N5Z5 321 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 GIPC2Q8TF65 315 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 CHAMP1Q96JM3 812 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 GCNAQ96QF7 691 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 TSPAN18Q96SJ8 248 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 REEP2Q9BRK0 252 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 THG1LQ9NWX6 298 aaKnown RBP21.02■□□□□ 0.96
CLN3-262ENST00000637699 HSFX1Q9UBD0 423 aa21.02■□□□□ 0.96
CLN3-262ENST00000637699 NUP210Q8TEM1 1887 aaPredicted RBP21.01■□□□□ 0.95
CLN3-262ENST00000637699 K7ENM7 598 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 ADRB2P07550 413 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 NFICP08651 508 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 ATF6P18850 670 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 HOXA6P31267 233 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 PXNP49023 591 aaPredicted RBP21.01■□□□□ 0.95
CLN3-262ENST00000637699 TUFMP49411 452 aaKnown RBP21.01■□□□□ 0.95
CLN3-262ENST00000637699 CCDC6Q16204 474 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 TAF12Q16514 161 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 TMEM119Q4V9L6 283 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 RILPL1Q5EBL4 403 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 MYCT1Q8N699 235 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 SLC46A2Q9BY10 475 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 IL21Q9HBE4 155 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 GKN1Q9NS71 199 aa21.01■□□□□ 0.95
CLN3-262ENST00000637699 KIF26AQ9ULI4 1882 aaPredicted RBP21.01■□□□□ 0.95
CLN3-262ENST00000637699 CNOT1A5YKK6 2376 aaKnown RBP21■□□□□ 0.95
CLN3-262ENST00000637699 A0A0B4J269 797 aa21■□□□□ 0.95
CLN3-262ENST00000637699 FOXD2O60548 495 aaPredicted RBP21■□□□□ 0.95
CLN3-262ENST00000637699 PIGRP01833 764 aa21■□□□□ 0.95
CLN3-262ENST00000637699 CYP11A1P05108 521 aa21■□□□□ 0.95
CLN3-262ENST00000637699 WEE1P30291 646 aa21■□□□□ 0.95
CLN3-262ENST00000637699 CDC25CP30307 473 aa21■□□□□ 0.95
CLN3-262ENST00000637699 MCM2P49736 904 aa21■□□□□ 0.95
CLN3-262ENST00000637699 TMEM132DQ14C87 1099 aa21■□□□□ 0.95
CLN3-262ENST00000637699 SF3A2Q15428 464 aaKnown RBP21■□□□□ 0.95
CLN3-262ENST00000637699 AASDHQ4L235 1098 aaPredicted RBP21■□□□□ 0.95
CLN3-262ENST00000637699 PKN3Q6P5Z2 889 aa21■□□□□ 0.95
CLN3-262ENST00000637699 GPBP1Q86WP2 473 aa21■□□□□ 0.95
CLN3-262ENST00000637699 CD302Q8IX05 232 aa21■□□□□ 0.95
CLN3-262ENST00000637699 ZCWPW1Q9H0M4 648 aa21■□□□□ 0.95
CLN3-262ENST00000637699 ARRDC1-AS1Q9H2J1 176 aa21■□□□□ 0.95
CLN3-262ENST00000637699 CPSF3Q9UKF6 684 aaKnown RBP21■□□□□ 0.95
CLN3-262ENST00000637699 ODF2LQ9ULJ1 636 aa21■□□□□ 0.95
CLN3-262ENST00000637699 ANK1P16157 1881 aa21■□□□□ 0.95
CLN3-262ENST00000637699 PIRO00625 290 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 CYB561D2O14569 222 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 FAM13AO94988 1023 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 PAX3P23760 479 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms