RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PCDHB8Q9UN66 801 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 BAG4O95429 457 aaKnown RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 ATP2B1P20020 1258 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 MARCKSP29966 332 aaPredicted RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 PDIA3P30101 505 aaKnown RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 RPL9P32969 192 aaKnown RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 YARSP54577 528 aaKnown RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 PSMD2Q13200 908 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 SLFN12Q8IYM2 578 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 TMEM130Q8N3G9 435 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 TTC9BQ8N6N2 239 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 MCPH1Q8NEM0 835 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 TSTD1Q8NFU3 115 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 DEPTORQ8TB45 409 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 PSMG2Q969U7 264 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 P2RY13Q9BPV8 354 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 SLC46A2Q9BY10 475 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 CCDC86Q9H6F5 360 aaKnown RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 CACNA2D2Q9NY47 1150 aa15.9■□□□□ 0.14
CLN3-249ENST00000636685 MBD1Q9UIS9 605 aaPredicted RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 TIMM13Q9Y5L4 95 aaPredicted RBP15.9■□□□□ 0.14
CLN3-249ENST00000636685 UPK3BL1B0FP48 263 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 UPK3BL2E5RIL1 263 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 DEXIO95424 95 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 GRM5P41594 1212 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 FBXO43Q4G163 708 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 CENPPQ6IPU0 288 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 ANO7Q6IWH7 933 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 PIK3AP1Q6ZUJ8 805 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 ARMCX6Q7L4S7 300 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 ATAD1Q8NBU5 361 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 MDM1Q8TC05 714 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 ACDQ96AP0 544 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 JAKMIP1Q96N16 626 aaKnown RBP15.89■□□□□ 0.13
CLN3-249ENST00000636685 CCDC94Q9BW85 323 aaPredicted RBP15.89■□□□□ 0.13
CLN3-249ENST00000636685 FSCN3Q9NQT6 498 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 TOPORSQ9NS56 1045 aaPredicted RBP15.89■□□□□ 0.13
CLN3-249ENST00000636685 TMEM74BQ9NUR3 256 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 CCL26Q9Y258 94 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 RAXQ9Y2V3 346 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 ASB3Q9Y575 518 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 CEP192Q8TEP8 1941 aa15.89■□□□□ 0.13
CLN3-249ENST00000636685 FGF19O95750 216 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 PRB1P04280 392 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 KCNE1P15382 129 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 NAMPTP43490 491 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 AMPD2Q01433 879 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 YWHAHQ04917 246 aaPredicted RBP15.88■□□□□ 0.13
CLN3-249ENST00000636685 ZNF423Q2M1K9 1284 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 EARS2Q5JPH6 523 aaKnown RBP15.88■□□□□ 0.13
CLN3-249ENST00000636685 RIN3Q8TB24 985 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 LPIN3Q9BQK8 851 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 CDT1Q9H211 546 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 IL21Q9HBE4 155 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 POLD4Q9HCU8 107 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 TBX20Q9UMR3 447 aa15.88■□□□□ 0.13
CLN3-249ENST00000636685 PTPRBP23467 1997 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 OBSL1O75147 1896 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 ANK1P16157 1881 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 MTMR11A4FU01 709 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 FAM205CA6NFA0 338 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 OAZ2O95190 189 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 XRCC6P12956 609 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLN3-249ENST00000636685 GJA4P35212 333 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 PTGER3P43115 390 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 GPR17Q13304 367 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 BLOC1S2Q6QNY1 142 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 APBB1IPQ7Z5R6 666 aaPredicted RBP15.87■□□□□ 0.13
CLN3-249ENST00000636685 RASSF3Q86WH2 238 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 TMEFF1Q8IYR6 380 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 CMTM8Q8IZV2 173 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 HDDC3Q8N4P3 179 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 OXER1Q8TDS5 423 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 NAP1L4Q99733 375 aaKnown RBP15.87■□□□□ 0.13
CLN3-249ENST00000636685 GTPBP2Q9BX10 602 aaKnown RBP15.87■□□□□ 0.13
CLN3-249ENST00000636685 AGXT2Q9BYV1 514 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 PCDHA12Q9UN75 941 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 TNFSF13BQ9Y275 285 aa15.87■□□□□ 0.13
CLN3-249ENST00000636685 ATXN2Q99700 1313 aaKnown RBP15.87■□□□□ 0.13
CLN3-249ENST00000636685 CDR1P51861 262 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 ZNF568Q3ZCX4 644 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 CCNI2Q6ZMN8 369 aaPredicted RBP15.86■□□□□ 0.13
CLN3-249ENST00000636685 ITIH5Q86UX2 942 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 TTC30AQ86WT1 665 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 SYT12Q8IV01 421 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 FBXL16Q8N461 479 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 FRMD1Q8N878 549 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 MDGA1Q8NFP4 955 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 RLN3Q8WXF3 142 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 USP13Q92995 863 aaPredicted RBP15.86■□□□□ 0.13
CLN3-249ENST00000636685 CNOT6LQ96LI5 555 aaKnown RBP15.86■□□□□ 0.13
CLN3-249ENST00000636685 CNTN3Q9P232 1028 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 TUBGCP4Q9UGJ1 667 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 PCDH15Q96QU1 1955 aa15.86■□□□□ 0.13
CLN3-249ENST00000636685 ANTXRLA6NF34 631 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 OR6C75A6NL08 312 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 M0QZQ0 153 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 TNFRSF10BO14763 440 aa15.85■□□□□ 0.13
CLN3-249ENST00000636685 CFIP05156 583 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms