RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 EPC1Q9H2F5 836 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 DPP3Q9NY33 737 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 AGO2Q9UKV8 859 aaKnown RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 CITO14578 2027 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 FRYLO94915 3013 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 DPYSL4O14531 572 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 CHADO15335 359 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 BMP15O95972 392 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 SCP2P22307 547 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 HOXC13P31276 330 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 DMWDQ09019 674 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 KCNA1Q09470 495 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 PUM1Q14671 1186 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-246ENST00000636228 WSCD1Q658N2 575 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 SCARA3Q6AZY7 606 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 FAM173BQ6P4H8 233 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 TXNDC11Q6PKC3 985 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 ZNF720Q7Z2F6 126 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 BRAPQ7Z569 592 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 EFCAB13Q8IY85 973 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 KRI1Q8N9T8 703 aaKnown RBP17.47■□□□□ 0.39
CLN3-246ENST00000636228 ZSWIM2Q8NEG5 633 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 E2F7Q96AV8 911 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 CLIC6Q96NY7 704 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 CCSER1Q9C0I3 900 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 ZCWPW1Q9H0M4 648 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 ASB7Q9H672 318 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 GTSE1Q9NYZ3 720 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 TBC1D7Q9P0N9 293 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 DERAQ9Y315 318 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 ASB3Q9Y575 518 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 DNAH14Q0VDD8 3507 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 MIA3Q5JRA6 1907 aa17.47■□□□□ 0.39
CLN3-246ENST00000636228 GPR179Q6PRD1 2367 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 PRAMEF12O95522 483 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 CYP11A1P05108 521 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 ATF6P18850 670 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 ADSSP30520 456 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 MCM2P49736 904 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 WNT7BP56706 349 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 CEBPZQ03701 1054 aaKnown RBP17.46■□□□□ 0.39
CLN3-246ENST00000636228 TNK2Q07912 1038 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 FCHO2Q0JRZ9 810 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 PTPAQ15257 358 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 METTL23Q86XA0 190 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 POMGNT1Q8WZA1 660 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 BORCS6Q96GS4 357 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 FAM84AQ96KN4 292 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 UPF2Q9HAU5 1272 aaKnown RBP17.46■□□□□ 0.39
CLN3-246ENST00000636228 STYXL1Q9Y6J8 313 aa17.46■□□□□ 0.39
CLN3-246ENST00000636228 MYMKA6NI61 221 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 SPECC1L-ADORA2AF8WAN1 911 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 CXCL12P48061 93 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 TUFMP49411 452 aaKnown RBP17.45■□□□□ 0.38
CLN3-246ENST00000636228 TAF6P49848 677 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 ARHGAP15Q53QZ3 475 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 SLFN12LQ6IEE8 588 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 Q6ZS52 159 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 ITIH5Q86UX2 942 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 THEM5Q8N1Q8 247 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 STKLD1Q8NE28 680 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 SAAL1Q96ER3 474 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 SLC46A2Q9BY10 475 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 PANK2Q9BZ23 570 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 ST6GALNAC4Q9H4F1 302 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 IL21Q9HBE4 155 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 TMLHEQ9NVH6 421 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 C2orf42Q9NWW7 574 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 ABI2Q9NYB9 513 aaPredicted RBP17.45■□□□□ 0.38
CLN3-246ENST00000636228 DLL3Q9NYJ7 618 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 DSEQ9UL01 958 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 C2CD2Q9Y426 696 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 DMXL1Q9Y485 3027 aa17.45■□□□□ 0.38
CLN3-246ENST00000636228 PATJQ8NI35 1801 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 CHURC1-FNTBB4DL54 471 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 FNTBP49356 437 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 GPR15P49685 360 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 CCR3P51677 355 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 NRLP54845 237 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 SRSF5Q13243 272 aaKnown RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 PON2Q15165 354 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 MAMSTRQ6ZN01 415 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 FAM213AQ9BRX8 229 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 FAM126AQ9BYI3 521 aaPredicted RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 TASP1Q9H6P5 420 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 C8orf33Q9H7E9 229 aaPredicted RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 MRPL44Q9H9J2 332 aaKnown RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 PARD6AQ9NPB6 346 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 FBXO2Q9UK22 296 aaPredicted RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 USP18Q9UMW8 372 aa17.44■□□□□ 0.38
CLN3-246ENST00000636228 PDCD11Q14690 1871 aaKnown RBP17.44■□□□□ 0.38
CLN3-246ENST00000636228 OTOGLQ3ZCN5 2332 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 MYBPHLA2RUH7 354 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 KPNA7A9QM74 516 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 FGF19O95750 216 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 HAPLN1P10915 354 aaPredicted RBP17.43■□□□□ 0.38
CLN3-246ENST00000636228 TGM1P22735 817 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 PAX3P23760 479 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 CTHP32929 405 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms