RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 EYA4O95677 639 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 ANXA1P04083 346 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 FAM163BP0C2L3 166 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 CNGA1P29973 690 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 SLC16A1P53985 500 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 ERVK-21P61565 698 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 TBCCQ15814 346 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 SLC18B1Q6NT16 456 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 SLC29A4Q7RTT9 530 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 FANCBQ8NB91 859 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 POC1BQ8TC44 478 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 SSH1Q8WYL5 1049 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 QTRT1Q9BXR0 403 aaKnown RBP3.96□□□□□ -1.78
SCN1A-208ENST00000625916 AMBRA1Q9C0C7 1298 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 ARHGEF3Q9NR81 526 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 SERTAD4Q9NUC0 356 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 DKK3Q9UBP4 350 aa3.96□□□□□ -1.78
SCN1A-208ENST00000625916 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.96□□□□□ -1.78
SCN1A-208ENST00000625916 E9PLN8 166 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 NDUFS2O75306 463 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 NXPH3O95157 252 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 POU3F3P20264 500 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-208ENST00000625916 KLF1Q13351 362 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-208ENST00000625916 PROSER3Q2NL68 480 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 SUPT20HL1Q3ZLR7 823 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 CEP78Q5JTW2 689 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 PRAMEF17Q5VTA0 474 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 SLC2A7Q6PXP3 512 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 ATRIPQ8WXE1 791 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 CLPTM1LQ96KA5 538 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 OSBPL9Q96SU4 736 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 VKORC1Q9BQB6 163 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 SMOC2Q9H3U7 446 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 ANLNQ9NQW6 1124 aa3.95□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF785A8K8V0 405 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 PPEF2O14830 753 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 GNAI3P08754 354 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 ITGALP20701 1170 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 CD6P30203 668 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 MMP13P45452 471 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 MASP1P48740 699 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 ALDH9A1P49189 494 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 PSMC1P62191 440 aaKnown RBP3.94□□□□□ -1.78
SCN1A-208ENST00000625916 GNAI1P63096 354 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 TLE1Q04724 770 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 IL10RAQ13651 578 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 ACAP2Q15057 778 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 RBM20Q5T481 1227 aaKnown RBP3.94□□□□□ -1.78
SCN1A-208ENST00000625916 RNF219Q5W0B1 726 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-208ENST00000625916 PPP4R3AQ6IN85 833 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 PGM2L1Q6PCE3 622 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 TECPR1Q7Z6L1 1165 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 PSD4Q8NDX1 1056 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 WASF1Q92558 559 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 TBC1D5Q92609 795 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 SCAMP4Q969E2 229 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 RGMAQ96B86 450 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 FAM136AQ96C01 138 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 MRGPRX4Q96LA9 322 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 WACQ9BTA9 647 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 BRD9Q9H8M2 597 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 MAN1C1Q9NR34 630 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 ELOVL5Q9NYP7 299 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 CALCOCO1Q9P1Z2 691 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-208ENST00000625916 TBX22Q9Y458 520 aa3.94□□□□□ -1.78
SCN1A-208ENST00000625916 TRIM75PA6NK02 468 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 TISP43B9A030 160 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 QSOX1O00391 747 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 VPS4BO75351 444 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 SOAT2O75908 522 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 TUBB4AP04350 444 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 RPLP2P05387 115 aaKnown RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 NHLRC4P0CG21 123 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 JUPP14923 745 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 CHRM3P20309 590 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 LPOP22079 712 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 PLCD1P51178 756 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 POLGP54098 1239 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 CCDC93Q567U6 631 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 TEDDM1Q5T9Z0 273 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 TAF2Q6P1X5 1199 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF804AQ7Z570 1209 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 NOP9Q86U38 636 aaKnown RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 PDSS2Q86YH6 399 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 CNGA4Q8IV77 575 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 ATL2Q8NHH9 583 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 KLHDC4Q8TBB5 520 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 REPS1Q96D71 796 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 ETAA1Q9NY74 926 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 TUBD1Q9UJT1 453 aa3.93□□□□□ -1.78
SCN1A-208ENST00000625916 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-208ENST00000625916 CCDC154A6NI56 674 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 KCNU1A8MYU2 1149 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 PRRT4C9JH25 899 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 K7ESF4 209 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 HTRA2O43464 458 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 NTN1O95631 604 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 TOP3BO95985 862 aaKnown RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 CHEK2O96017 543 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms