RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 OAZ2O95190 189 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 FAM163BP0C2L3 166 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 PON1P27169 355 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 SMC1AQ14683 1233 aaKnown RBP21.12■□□□□ 0.97
UPF3A-211ENST00000618700 PTPROQ16827 1216 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 FKBP15Q5T1M5 1219 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 PLPP4Q5VZY2 271 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 KIAA1841Q6NSI8 718 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 DPY19L2P1Q6NXN4 242 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 PDXDC1Q6P996 788 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 TRIM65Q6PJ69 517 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 SCARA5Q6ZMJ2 495 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 ANKS3Q6ZW76 656 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 ADGRF2Q8IZF7 708 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 TMEM86AQ8N2M4 240 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 AUTS2Q8WXX7 1259 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 RIN2Q8WYP3 895 aaPredicted RBP21.12■□□□□ 0.97
UPF3A-211ENST00000618700 MMS19Q96T76 1030 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 SDCBP2Q9H190 292 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 MRPL17Q9NRX2 175 aaKnown RBP21.12■□□□□ 0.97
UPF3A-211ENST00000618700 C2orf71A6NGG8 1288 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 C2CD2LO14523 706 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 GABRDO14764 452 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 TBC1D4O60343 1298 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 CLSTN1O94985 981 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 SERPINC1P01008 464 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 SLC9A1P19634 815 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 POU3F3P20264 500 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 YWHAHQ04917 246 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 KCNMA1Q12791 1236 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 ADGRE1Q14246 886 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 PSMD5Q16401 504 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 OVOS1Q6IE37 1185 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 PRSS55Q6UWB4 352 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 MRPL43Q8N983 215 aaKnown RBP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 TATDN2Q93075 761 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 NAP1L5Q96NT1 182 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 NT5C1BQ96P26 610 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 RTP3Q9BQQ7 232 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 RXFP1Q9HBX9 757 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 SIX2Q9NPC8 291 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.11■□□□□ 0.97
UPF3A-211ENST00000618700 LMCD1Q9NZU5 365 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 SSX2IPQ9Y2D8 614 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 BACE2Q9Y5Z0 518 aa21.11■□□□□ 0.97
UPF3A-211ENST00000618700 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.1■□□□□ 0.97
UPF3A-211ENST00000618700 HIDE1A8MVS5 230 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 CSPG5O95196 566 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 CXCL14O95715 111 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 WARSP23381 471 aaKnown RBP21.1■□□□□ 0.97
UPF3A-211ENST00000618700 RAP1GAPP47736 663 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 LRMPQ12912 555 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 BMS1Q14692 1282 aaKnown RBP21.1■□□□□ 0.97
UPF3A-211ENST00000618700 ZNF280DQ6N043 979 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 OSTM1Q86WC4 334 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 ARHGEF19Q8IW93 802 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 ERGIC2Q96RQ1 377 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 ARID3AQ99856 593 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 CYP3A43Q9HB55 503 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 FNIP2Q9P278 1114 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 SIK3Q9Y2K2 1263 aa21.1■□□□□ 0.97
UPF3A-211ENST00000618700 MYO7AQ13402 2215 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 H7C4K7 107 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 TEX33O43247 280 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 TBXAS1P24557 533 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-211ENST00000618700 GCNT1Q02742 428 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 CREMQ03060 361 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 UBXN1Q04323 297 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 INCA1Q0VD86 236 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 CUL2Q13617 745 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 FILIP1LQ4L180 1135 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 PHLDB3Q6NSJ2 640 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 RSPO2Q6UXX9 243 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-211ENST00000618700 METTL23Q86XA0 190 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 CLSTN3Q9BQT9 956 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 MRPL45Q9BRJ2 306 aaKnown RBP21.09■□□□□ 0.97
UPF3A-211ENST00000618700 FAM124BQ9H5Z6 455 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-211ENST00000618700 FBXL5Q9UKA1 691 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 MTCH2Q9Y6C9 303 aa21.09■□□□□ 0.97
UPF3A-211ENST00000618700 LHX1P48742 406 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 CDH8P55286 799 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 APBA1Q02410 837 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 NR1I3Q14994 352 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 SYCP1Q15431 976 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 CTXN3Q4LDR2 81 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 SLC8B1Q6J4K2 584 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 UBR7Q8N806 425 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 OR10T2Q8NGX3 314 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 MICAL1Q8TDZ2 1067 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 CDX2Q99626 313 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-211ENST00000618700 OXCT2Q9BYC2 517 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-211ENST00000618700 PLCB1Q9NQ66 1216 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 APEX2Q9UBZ4 518 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 STXBP5LQ9Y2K9 1186 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 NME7Q9Y5B8 376 aa21.08■□□□□ 0.97
UPF3A-211ENST00000618700 OR6C75A6NL08 312 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 TEX28O15482 410 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 ADAM12O43184 909 aa21.07■□□□□ 0.96
UPF3A-211ENST00000618700 CNPP09543 421 aaKnown RBP21.07■□□□□ 0.96
UPF3A-211ENST00000618700 WEE2P0C1S8 567 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms