RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PKP1Q13835 747 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 STK38Q15208 465 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 C9orf57Q5W0N0 161 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 ATL3Q6DD88 541 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 DCLK2Q8N568 766 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 DNAJC19Q96DA6 116 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 FAM212AQ96EL1 285 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 SENP8Q96LD8 212 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 STRA6Q9BX79 667 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 ZHX3Q9H4I2 956 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 SLITRK6Q9H5Y7 841 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 HSFX1Q9UBD0 423 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 SEL1LQ9UBV2 794 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 NDRG2Q9UN36 371 aaKnown RBP20.52■□□□□ 0.87
CDX1-202ENST00000616154 ZDHHC9Q9Y397 364 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 ASB3Q9Y575 518 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 PIAS3Q9Y6X2 628 aa20.52■□□□□ 0.87
CDX1-202ENST00000616154 A0A1W2PRU2 124 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 FRMD3A2A2Y4 597 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 MYMKA6NI61 221 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 HEPACAM2A8MVW5 462 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 ARNTLO00327 626 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 PIRO00625 290 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 ZNF263O14978 683 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 PPP1R37O75864 691 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 NMT1P30419 496 aaKnown RBP20.51■□□□□ 0.87
CDX1-202ENST00000616154 MLLT6P55198 1093 aaPredicted RBP20.51■□□□□ 0.87
CDX1-202ENST00000616154 TMEM132DQ14C87 1099 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 ARMCX5Q6P1M9 558 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 MAMSTRQ6ZN01 415 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 FAM3CQ92520 227 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 FAM126AQ9BYI3 521 aaPredicted RBP20.51■□□□□ 0.87
CDX1-202ENST00000616154 EPC1Q9H2F5 836 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 SLC27A5Q9Y2P5 690 aa20.51■□□□□ 0.87
CDX1-202ENST00000616154 ANO9A1A5B4 782 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 CYP11A1P05108 521 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 NUCB2P80303 420 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 TSSK4Q6SA08 328 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 SV2BQ7L1I2 683 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 ATAD1Q8NBU5 361 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 PSMG2Q969U7 264 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 HVCN1Q96D96 273 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 RSPRY1Q96DX4 576 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 MSANTD3Q96H12 275 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 TMEM209Q96SK2 561 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 ASB7Q9H672 318 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 OLFML3Q9NRN5 406 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 CHMP5Q9NZZ3 219 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 C2CD2Q9Y426 696 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 STYXL1Q9Y6J8 313 aa20.5■□□□□ 0.87
CDX1-202ENST00000616154 ANKRD63C9JTQ0 380 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 FGF19O95750 216 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 TDGF1P13385 188 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 GAP43P17677 238 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 ACOT2P49753 483 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 POU5F1Q01860 360 aaKnown RBP20.49■□□□□ 0.87
CDX1-202ENST00000616154 FCHO2Q0JRZ9 810 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 E2F4Q16254 413 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 ADALQ6DHV7 355 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 SLFN12LQ6IEE8 588 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 ZNF720Q7Z2F6 126 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 DNAJB7Q7Z6W7 309 aaPredicted RBP20.49■□□□□ 0.87
CDX1-202ENST00000616154 TTC9BQ8N6N2 239 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 OR10T2Q8NGX3 314 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 MKNK1Q9BUB5 465 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 NCDNQ9UBB6 729 aa20.49■□□□□ 0.87
CDX1-202ENST00000616154 TFIP11Q9UBB9 837 aaKnown RBP20.49■□□□□ 0.87
CDX1-202ENST00000616154 SMG5Q9UPR3 1016 aaKnown RBP20.49■□□□□ 0.87
CDX1-202ENST00000616154 DENND4CQ5VZ89 1909 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 TISP43B9A030 160 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 CHADO15335 359 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 CUTAO60888 179 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 STAT6P42226 847 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 ZC2HC1CQ53FD0 456 aaPredicted RBP20.48■□□□□ 0.87
CDX1-202ENST00000616154 STXBP5Q5T5C0 1151 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 C1orf228Q6PIY5 440 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 GAREM2Q75VX8 874 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 ITIH5Q86UX2 942 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 SFR1Q86XK3 245 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 YAF2Q8IY57 180 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 CUEDC2Q9H467 287 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 LMAN1LQ9HAT1 526 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 AGO2Q9UKV8 859 aaKnown RBP20.48■□□□□ 0.87
CDX1-202ENST00000616154 DSEQ9UL01 958 aa20.48■□□□□ 0.87
CDX1-202ENST00000616154 KIF26AQ9ULI4 1882 aaPredicted RBP20.47■□□□□ 0.87
CDX1-202ENST00000616154 SOAT2O75908 522 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 PUM1Q14671 1186 aaKnown RBP eCLIP20.47■□□□□ 0.87
CDX1-202ENST00000616154 SHC4Q6S5L8 630 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 DYMQ7RTS9 669 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 ARID3BQ8IVW6 561 aaPredicted RBP20.47■□□□□ 0.87
CDX1-202ENST00000616154 CSGALNACT1Q8TDX6 532 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 ZCWPW1Q9H0M4 648 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 TNMDQ9H2S6 317 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 KBTBD4Q9NVX7 518 aa20.47■□□□□ 0.87
CDX1-202ENST00000616154 CHRNB1P11230 501 aa20.46■□□□□ 0.87
CDX1-202ENST00000616154 CCNE1P24864 410 aa20.46■□□□□ 0.87
CDX1-202ENST00000616154 GABRR2P28476 465 aa20.46■□□□□ 0.87
CDX1-202ENST00000616154 TUFMP49411 452 aaKnown RBP20.46■□□□□ 0.87
CDX1-202ENST00000616154 TAF6P49848 677 aa20.46■□□□□ 0.87
CDX1-202ENST00000616154 CCR3P51677 355 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms