RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RFC5P40937 340 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 GRAMD1BQ3KR37 738 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 SLC27A3Q5K4L6 730 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 CRLF3Q8IUI8 442 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 NUDCD3Q8IVD9 361 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 IL31RAQ8NI17 732 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 MKL1Q969V6 931 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 MASTLQ96GX5 879 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 PPP1R16BQ96T49 567 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 EPB41L4BQ9H329 900 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 IFT122Q9HBG6 1241 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 H0YCG3 227 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 CALB1P05937 261 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 BGNP21810 368 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 RPS6P62753 249 aaKnown RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 CYP24A1Q07973 514 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 NCOA4Q13772 614 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 RNF43Q68DV7 783 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 RANBP17Q9H2T7 1088 aaKnown RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 DMAC2Q9NW81 257 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 CYP39A1Q9NYL5 469 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 ADAMTS7Q9UKP4 1686 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 ZMYM2Q9UBW7 1377 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 F8VP50 259 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 INO80B-WBP1J3KQ70 363 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 PSAPP07602 524 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 CYP3A4P08684 503 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 RBP3P10745 1247 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 MYL2P10916 166 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 SAT1P21673 171 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ORC1Q13415 861 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 SLC1A5Q15758 541 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 STRIP1Q5VSL9 837 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 KCTD17Q8N5Z5 321 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 GMCL1P1Q8NEA9 526 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ACTL9Q8TC94 416 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ZNF526Q8TF50 670 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 ZNF570Q96NI8 536 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 TMEM109Q9BVC6 243 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 INO80BQ9C086 356 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 TMEM39BQ9GZU3 492 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 NDE1Q9NXR1 346 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ALS2Q96Q42 1657 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 IGLV3-22A0A075B6J6 115 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 DNALI1O14645 258 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 TNNC2P02585 160 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 KRT3P12035 628 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ADRA2BP18089 450 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 GCLCP48506 637 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 WDR4P57081 412 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 OTUD4Q01804 1114 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 MYBPC2Q14324 1141 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 KPNB1Q14974 876 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 OR6B2Q6IFH4 312 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 GPAT2Q6NUI2 795 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 TRIM72Q6ZMU5 477 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 RGS9BPQ6ZS82 235 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 SLC9A9Q8IVB4 645 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 TEX9Q8N6V9 391 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 SLC26A7Q8TE54 656 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ZBED1O96006 694 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ASNSP08243 561 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 RPL7AP62424 266 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 BAATQ14032 418 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 PSMD6Q15008 389 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 C15orf52Q6ZUT6 534 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 TRABD2AQ86V40 505 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 ZC3H3Q8IXZ2 948 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.24□□□□□ -0.29
LIG1-221ENST00000613670 SLC25A41Q8N5S1 370 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 EXD1Q8NHP7 514 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 PPP4R1Q8TF05 950 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 FBXO6Q9NRD1 293 aaPredicted RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 PAPOLBQ9NRJ5 636 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 RAB6BQ9NRW1 208 aa13.24□□□□□ -0.29
LIG1-221ENST00000613670 NOCTQ9UK39 431 aaKnown RBP13.24□□□□□ -0.29
LIG1-221ENST00000613670 PSTPIP1O43586 416 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 CHRNA5P30532 468 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 CUL2Q13617 745 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 SLC15A2Q16348 729 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 PCGF5Q86SE9 256 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 CDR2LQ86X02 465 aaPredicted RBP13.23□□□□□ -0.29
LIG1-221ENST00000613670 DAW1Q8N136 415 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 EMC1Q8N766 993 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 TMEM120AQ9BXJ8 343 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 SYNJ2BP-COX16A0A087WUM0 186 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 ATP9AO75110 1047 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 KRT36O76013 467 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 APRTP07741 180 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 VIL1P09327 827 aaKnown RBP13.23□□□□□ -0.29
LIG1-221ENST00000613670 CDH6P55285 790 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 OTOAQ7RTW8 1153 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 ZCCHC9Q8N567 271 aaKnown RBP13.23□□□□□ -0.29
LIG1-221ENST00000613670 AGR3Q8TD06 166 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 ATP2A3Q93084 1043 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 FOXP3Q9BZS1 431 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 GPR88Q9GZN0 384 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 VCX3BQ9H321 246 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 ARHGEF3Q9NR81 526 aa13.23□□□□□ -0.29
LIG1-221ENST00000613670 RNF146Q9NTX7 359 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms