RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CD83Q01151 205 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 ARID5AQ03989 594 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 TCP10Q12799 353 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 SPTY2D1Q68D10 685 aaPredicted RBP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 TMEM200BQ69YZ2 307 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 ZNF804AQ7Z570 1209 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 OSTM1Q86WC4 334 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 LURAP1LQ8IV03 231 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 CELF2-AS1Q8N7Q2 184 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 GPRC5AQ8NFJ5 357 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 GDPD5Q8WTR4 605 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 FBXW5Q969U6 566 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 GPATCH3Q96I76 525 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 ANKRD2Q9GZV1 360 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 PORCNQ9H237 461 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 PIF1Q9H611 641 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 PANK3Q9H999 370 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 AGO3Q9H9G7 860 aaKnown RBP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 TXNRD2Q9NNW7 524 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 HECAQ9UBI9 543 aaPredicted RBP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 DBF4Q9UBU7 674 aaPredicted RBP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 FAM184BQ9ULE4 1060 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 FAM50BQ9Y247 325 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 DMDP11532 3685 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 COL4A4P53420 1690 aaPredicted RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 LOC102724159A0A0B4J2E5 919 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 AQP7O14520 342 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 C4BPAP04003 597 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 AMY2AP04746 511 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 FGRP09769 529 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 AMY2BP19961 511 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 HSD3B2P26439 372 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 CYP2C18P33260 490 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 TAP1Q03518 808 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 DMWDQ09019 674 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 PABPC4Q13310 644 aaKnown RBP eCLIP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 PWP2Q15269 919 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 FAM47AQ5JRC9 791 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 YOD1Q5VVQ6 348 aaPredicted RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 KANK2Q63ZY3 851 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 Q6ZPA2 131 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 ANKRD33Q7Z3H0 272 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 MTDHQ86UE4 582 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 LRRC47Q8N1G4 583 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 ANKRD35Q8N283 1001 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 ST13P5Q8NFI4 369 aaPredicted RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 PLBD2Q8NHP8 589 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 NEK9Q8TD19 979 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 KCNG4Q8TDN1 519 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 HNRNPLLQ8WVV9 542 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 OSBPL2Q9H1P3 480 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 OR10A5Q9H207 317 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 GREM2Q9H772 168 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 NOP58Q9Y2X3 529 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 TRAF6Q9Y4K3 522 aa5.38□□□□□ -1.55
LINC00540-201ENST00000611481 ASH1LQ9NR48 2969 aaKnown RBP5.38□□□□□ -1.55
LINC00540-201ENST00000611481 SEPT4O43236 478 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 HTATSF1O43719 755 aaKnown RBP5.37□□□□□ -1.55
LINC00540-201ENST00000611481 MPIG6BO95866 241 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 KRT15P19012 456 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 IGHMBP2P38935 993 aaKnown RBP5.37□□□□□ -1.55
LINC00540-201ENST00000611481 HMGCS2P54868 508 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 ANAPC15P60006 121 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 IRX3P78415 501 aaPredicted RBP5.37□□□□□ -1.55
LINC00540-201ENST00000611481 RIN1Q13671 783 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 RNF187Q5TA31 235 aaPredicted RBP5.37□□□□□ -1.55
LINC00540-201ENST00000611481 WDR78Q5VTH9 848 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 FKBP1CQ5VVH2 108 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 LAIR1Q6GTX8 287 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 GRAMD4Q6IC98 578 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 LRSAM1Q6UWE0 723 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 MAMDC2Q7Z304 686 aaPredicted RBP5.37□□□□□ -1.55
LINC00540-201ENST00000611481 FAM151AQ8WW52 585 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 VOPP1Q96AW1 172 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 PAGR1Q9BTK6 254 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 AMNQ9BXJ7 453 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 MYH16Q9H6N6 1097 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 STARD7Q9NQZ5 370 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 PHIPQ8WWQ0 1821 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 VPS13AQ96RL7 3174 aa5.37□□□□□ -1.55
LINC00540-201ENST00000611481 GCN1Q92616 2671 aaKnown RBP5.36□□□□□ -1.55
LINC00540-201ENST00000611481 GSTA4O15217 222 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 CLASP2O75122 1294 aaKnown RBP5.36□□□□□ -1.55
LINC00540-201ENST00000611481 TAF5LO75529 589 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 PGK1P00558 417 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 PYGMP11217 842 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 BMP5P22003 454 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 JAM2P57087 298 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 CHRNDQ07001 517 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 SIGLEC14Q08ET2 396 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 SPP2Q13103 211 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 CRY1Q16526 586 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 PRAMEF19Q5SWL8 479 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 PCDH19Q8TAB3 1148 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 TEKT1Q969V4 418 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 WDR26Q9H7D7 661 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 XPNPEP3Q9NQH7 507 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 UCKL1Q9NWZ5 548 aa5.36□□□□□ -1.55
LINC00540-201ENST00000611481 SH3BP1Q9Y3L3 701 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms