RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CEP72Q9P209 647 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ANKFY1Q9P2R3 1169 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SLC8A2Q9UPR5 921 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 BOLA1Q9Y3E2 137 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 FLNBO75369 2602 aaKnown RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 DOCK6Q96HP0 2047 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 VWA8A3KMH1 1905 aa6.84□□□□□ -1.32
CUX1-220ENST00000607092 SDK1Q7Z5N4 2213 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 A0A1W2PRU2 124 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 TMEM8BA6NDV4 472 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 SHISA7A6NL88 538 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 SLC38A8A6NNN8 435 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 K7ESF4 209 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 HRO43593 1189 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 HIP1RO75146 1068 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 KRT37O76014 449 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 EPN2O95208 641 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 HARSP12081 509 aaKnown RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 PLS3P13797 630 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DRD1P21728 446 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DPP6P42658 865 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 AARSP49588 968 aaKnown RBP eCLIP6.83□□□□□ -1.321e-6■■■■□ 20.6
CUX1-220ENST00000607092 POU5F1Q01860 360 aaKnown RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 SOX4Q06945 474 aaPredicted RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 BFSP1Q12934 665 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DUSP4Q13115 394 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 CCINQ13939 588 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 PDGFRLQ15198 375 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 TEAD2Q15562 447 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 ZNF174Q15697 407 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 LPAL2Q16609 132 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 ME3Q16798 604 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DAB2IPQ5VWQ8 1189 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 CENPPQ6IPU0 288 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 CC2D1AQ6P1N0 951 aaPredicted RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 DTHD1Q6ZMT9 781 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 RNF19BQ6ZMZ0 732 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DNAJB7Q7Z6W7 309 aaPredicted RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 CEP120Q8N960 986 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 FBXO18Q8NFZ0 1043 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 SPPL2BQ8TCT7 592 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 BICD1Q96G01 975 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 CDK5RAP3Q96JB5 506 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 ZC3H10Q96K80 434 aaKnown RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 ZSCAN31Q96LW9 406 aaPredicted RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 ZMAT2Q96NC0 199 aaKnown RBP6.83□□□□□ -1.32
CUX1-220ENST00000607092 OCEL1Q9H607 264 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 DERAQ9Y315 318 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 ITPR1Q14643 2758 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 NOTCH4Q99466 2003 aa6.83□□□□□ -1.32
CUX1-220ENST00000607092 SPAG17Q6Q759 2223 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 A0A087WWV3 80 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 TTC26A0AVF1 554 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 HNRNPDLO14979 420 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 ATMINO43313 823 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 MOSPD3O75425 235 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 EDN1P05305 212 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 MAPTP10636 758 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 GABRR2P28476 465 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 PMLP29590 882 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 LIG4P49917 911 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 PDE6CP51160 858 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 NEK4P51957 841 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 NR1H3Q13133 447 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 NFE2Q16621 373 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 SLC10A6Q3KNW5 377 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 RILPL1Q5EBL4 403 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 GPR158Q5T848 1215 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 STPG1Q5TH74 334 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 HEATR6Q6AI08 1181 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 RINT1Q6NUQ1 792 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 NT5DC4Q86YG4 428 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 TMC8Q8IU68 726 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 DCP1BQ8IZD4 617 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 FAM160A2Q8N612 972 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 NECAB1Q8N987 351 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 MRPS31Q92665 395 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 C18orf25Q96B23 403 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 ZSWIM3Q96MP5 696 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 CXCL16Q9H2A7 254 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 ASB7Q9H672 318 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 RPF1Q9H9Y2 349 aaKnown RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 SH2B1Q9NRF2 756 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 UXTQ9UBK9 157 aaPredicted RBP6.82□□□□□ -1.32
CUX1-220ENST00000607092 ODF2LQ9ULJ1 636 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 LIMCH1Q9UPQ0 1083 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 USP20Q9Y2K6 914 aa6.82□□□□□ -1.32
CUX1-220ENST00000607092 CITO14578 2027 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 GCN1Q92616 2671 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 MTMR11A4FU01 709 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 HAX1O00165 279 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ABLIM1O14639 778 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 TRDMT1O14717 391 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 AXIN1O15169 862 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 OGTO15294 1046 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SLC16A4O15374 487 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CYP11A1P05108 521 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 PROS1P07225 676 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CSH1P0DML2 217 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CSH2P0DML3 217 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms