RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ENPEPQ07075 957 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 ZCWPW2Q504Y3 356 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 OVOS1Q6IE37 1185 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 SPATA31D4Q6ZUB0 917 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 CCDC149Q6ZUS6 474 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 USP37Q86T82 979 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 TCEAL8Q8IYN2 117 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 ADSSL1Q8N142 457 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 SPATA18Q8TC71 538 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 SMARCE1Q969G3 411 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 GDAP2Q9NXN4 497 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 CDH22Q9UJ99 828 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 AGAP1Q9UPQ3 857 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 NR2E1Q9Y466 385 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 PCDHA5Q9Y5H7 936 aa17.43■□□□□ 0.38
LSM4-206ENST00000600289 TPRP12270 2363 aaKnown RBP17.43■□□□□ 0.38
LSM4-206ENST00000600289 CYB561D2O14569 222 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 AP3M2P53677 418 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 MCCD1P59942 119 aaPredicted RBP17.42■□□□□ 0.38
LSM4-206ENST00000600289 EDRF1Q3B7T1 1238 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 CSGALNACT2Q8N6G5 542 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 RDH13Q8NBN7 331 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 FNBP1Q96RU3 617 aa17.42■□□□□ 0.38
LSM4-206ENST00000600289 WDR6Q9NNW5 1121 aaKnown RBP17.42■□□□□ 0.38
LSM4-206ENST00000600289 AFF4Q9UHB7 1163 aaKnown RBP17.42■□□□□ 0.38
LSM4-206ENST00000600289 TIMM13Q9Y5L4 95 aaPredicted RBP17.42■□□□□ 0.38
LSM4-206ENST00000600289 PTPRDP23468 1912 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 STAU1O95793 577 aaKnown RBP17.41■□□□□ 0.38
LSM4-206ENST00000600289 GPR17Q13304 367 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 PPM1LQ5SGD2 360 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 LMBRD2Q68DH5 695 aaPredicted RBP17.41■□□□□ 0.38
LSM4-206ENST00000600289 TRAPPC11Q7Z392 1133 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 LIMS2Q7Z4I7 341 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 METTL23Q86XA0 190 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 SLC7A14Q8TBB6 771 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 FEZF2Q8TBJ5 459 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 PARD3BQ8TEW8 1205 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 SMG7Q92540 1137 aaKnown RBP17.41■□□□□ 0.38
LSM4-206ENST00000600289 HSFX1Q9UBD0 423 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 DOCK6Q96HP0 2047 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 CLUHO75153 1309 aa17.41■□□□□ 0.38
LSM4-206ENST00000600289 XYLBO75191 536 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 WEE2P0C1S8 567 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 DLATP10515 647 aaKnown RBP17.4■□□□□ 0.38
LSM4-206ENST00000600289 TNNI1P19237 187 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 NR2F2P24468 414 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 RPL13P26373 211 aaKnown RBP17.4■□□□□ 0.38
LSM4-206ENST00000600289 PPP1R2P41236 205 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 MYO1EQ12965 1108 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 CENPPQ6IPU0 288 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 DPH6Q7L8W6 267 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 FRMD5Q7Z6J6 570 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 ZDHHC14Q8IZN3 488 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 TMEM86AQ8N2M4 240 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 TOP6BLQ8N6T0 577 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 PLEKHO2Q8TD55 490 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 TMC2Q8TDI7 906 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 NKD2Q969F2 451 aaPredicted RBP17.4■□□□□ 0.38
LSM4-206ENST00000600289 CCDC127Q96BQ5 260 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 RMDN1Q96DB5 314 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 FAM84AQ96KN4 292 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 CNTNAP3BQ96NU0 1288 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 IPO9Q96P70 1041 aaKnown RBP17.4■□□□□ 0.38
LSM4-206ENST00000600289 CNTNAP3Q9BZ76 1288 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 MAPK8IP1Q9UQF2 711 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 FRMD4BQ9Y2L6 1034 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 MYO10Q9HD67 2058 aa17.4■□□□□ 0.38
LSM4-206ENST00000600289 LRRIQ3A6PVS8 624 aaPredicted RBP17.39■□□□□ 0.37
LSM4-206ENST00000600289 KRT19P08727 400 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 CPB1P15086 417 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 ELF1P32519 619 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 PRCPP42785 496 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 CASP4P49662 377 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 SCARA3Q6AZY7 606 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 ZC3H3Q8IXZ2 948 aaKnown RBP17.39■□□□□ 0.37
LSM4-206ENST00000600289 SMYD4Q8IYR2 804 aaPredicted RBP17.39■□□□□ 0.37
LSM4-206ENST00000600289 PLCD3Q8N3E9 789 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 ZNF516Q92618 1163 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 HPDLQ96IR7 371 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 RPGRIP1Q96KN7 1286 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 RTP3Q9BQQ7 232 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 MKNK1Q9BUB5 465 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 ZCWPW1Q9H0M4 648 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 L1RE1Q9UN81 338 aa17.39■□□□□ 0.37
LSM4-206ENST00000600289 R3HCC1Q9Y3T6 440 aaKnown RBP17.39■□□□□ 0.37
LSM4-206ENST00000600289 EP300Q09472 2414 aaPredicted RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 ACACBO00763 2458 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 C2CD4DB7Z1M9 353 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 IKBKBO14920 756 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 HUS1O60921 280 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 SEC24AO95486 1093 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 VNN2O95498 520 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 ATICP31939 592 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 SMARCB1Q12824 385 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 BFSP1Q12934 665 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 PTPN21Q16825 1174 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 WSCD1Q658N2 575 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 FOXR2Q6PJQ5 311 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 RNF19BQ6ZMZ0 732 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 INTS8Q75QN2 995 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms