RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 C19orf67A6NJJ6 358 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 PAPLNO95428 1278 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 EPB41P11171 864 aaKnown RBP16.34■□□□□ 0.21
LIG1-219ENST00000600055 ELF1P32519 619 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 AP3M2P53677 418 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 STX17P56962 302 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 FKBP3Q00688 224 aaKnown RBP16.34■□□□□ 0.21
LIG1-219ENST00000600055 LRRC63Q05C16 580 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 PPP3CAQ08209 521 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 GPR17Q13304 367 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 UVSSAQ2YD98 709 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 CCDC149Q6ZUS6 474 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 INTS8Q75QN2 995 aaKnown RBP16.34■□□□□ 0.21
LIG1-219ENST00000600055 SV2AQ7L0J3 742 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 LRRTM3Q86VH5 581 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 GJD3Q8N144 294 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 THEM5Q8N1Q8 247 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 TOP6BLQ8N6T0 577 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 MKNK1Q9BUB5 465 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 OXCT2Q9BYC2 517 aaPredicted RBP16.34■□□□□ 0.21
LIG1-219ENST00000600055 ZCWPW1Q9H0M4 648 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 XYLT2Q9H1B5 865 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 CRISPLD1Q9H336 500 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 MMRN2Q9H8L6 949 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 PIDD1Q9HB75 910 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 AFF4Q9UHB7 1163 aaKnown RBP16.34■□□□□ 0.21
LIG1-219ENST00000600055 POLIQ9UNA4 740 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 C5orf42Q9H799 3197 aa16.34■□□□□ 0.21
LIG1-219ENST00000600055 TSC2P49815 1807 aa16.33■□□□□ 0.21
LIG1-219ENST00000600055 MTMR11A4FU01 709 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 LOC730098B7Z3J9 87 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 PRRG1O14668 218 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 IKBKBO14920 756 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 HNRNPA1P09651 372 aaKnown RBP eCLIP16.33■□□□□ 0.2
LIG1-219ENST00000600055 ACAT1P24752 427 aaKnown RBP16.33■□□□□ 0.2
LIG1-219ENST00000600055 PPP1R2P41236 205 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 GCLMP48507 274 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 NTHL1P78549 312 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 NCOA4Q13772 614 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 WDR72Q3MJ13 1102 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 ZACNQ401N2 412 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 SLC39A12Q504Y0 691 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 TTI2Q6NXR4 508 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 LIMS2Q7Z4I7 341 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 TCEAL8Q8IYN2 117 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 ADGRF2Q8IZF7 708 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 TTC9BQ8N6N2 239 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 TRIML1Q8N9V2 468 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 ATAD1Q8NBU5 361 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 KBTBD7Q8WVZ9 684 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 MMS19Q96T76 1030 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 HCFC1R1Q9NWW0 138 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 DDX43Q9NXZ2 648 aaKnown RBP16.33■□□□□ 0.2
LIG1-219ENST00000600055 NXF1Q9UBU9 619 aaKnown RBP16.33■□□□□ 0.2
LIG1-219ENST00000600055 INSL5Q9Y5Q6 135 aa16.33■□□□□ 0.2
LIG1-219ENST00000600055 C2CD4DB7Z1M9 353 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 GOLGA6L22H0YM25 854 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 TNFRSF10AO00220 468 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 HOXA9P31269 272 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 DUSP4Q13115 394 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 PAK1Q13153 545 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 CCDC142Q17RM4 750 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 CYP26C1Q6V0L0 522 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 GRASPQ7Z6J2 395 aaPredicted RBP16.32■□□□□ 0.2
LIG1-219ENST00000600055 TMEM86AQ8N2M4 240 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 KHSRPQ92945 711 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIG1-219ENST00000600055 SYAP1Q96A49 352 aaPredicted RBP16.32■□□□□ 0.2
LIG1-219ENST00000600055 MRPL45Q9BRJ2 306 aaKnown RBP16.32■□□□□ 0.2
LIG1-219ENST00000600055 RHOBTB2Q9BYZ6 727 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 WDR6Q9NNW5 1121 aaKnown RBP16.32■□□□□ 0.2
LIG1-219ENST00000600055 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIG1-219ENST00000600055 TMLHEQ9NVH6 421 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 SLC27A5Q9Y2P5 690 aa16.32■□□□□ 0.2
LIG1-219ENST00000600055 CLUHO75153 1309 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 GABRDO14764 452 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 SLC16A3O15427 465 aaKnown RBP16.31■□□□□ 0.2
LIG1-219ENST00000600055 SOAT2O75908 522 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 CLSTN1O94985 981 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 STAU1O95793 577 aaKnown RBP16.31■□□□□ 0.2
LIG1-219ENST00000600055 HLA-DRAP01903 254 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 LMO2P25791 158 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 ATICP31939 592 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 MCCD1P59942 119 aaPredicted RBP16.31■□□□□ 0.2
LIG1-219ENST00000600055 TNNC1P63316 161 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 TWF1Q12792 350 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 ZNF699Q32M78 642 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 SPOPLQ6IQ16 392 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 DPH6Q7L8W6 267 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 PI4K2AQ9BTU6 479 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 DNMT3BQ9UBC3 853 aaKnown RBP16.31■□□□□ 0.2
LIG1-219ENST00000600055 NME7Q9Y5B8 376 aa16.31■□□□□ 0.2
LIG1-219ENST00000600055 MTCL1Q9Y4B5 1905 aaKnown RBP16.31■□□□□ 0.2
LIG1-219ENST00000600055 BICDL2A1A5D9 508 aa16.3■□□□□ 0.2
LIG1-219ENST00000600055 N4BP1O75113 896 aaKnown RBP16.3■□□□□ 0.2
LIG1-219ENST00000600055 ATP2C2O75185 946 aa16.3■□□□□ 0.2
LIG1-219ENST00000600055 XYLBO75191 536 aa16.3■□□□□ 0.2
LIG1-219ENST00000600055 LRRN2O75325 713 aa16.3■□□□□ 0.2
LIG1-219ENST00000600055 LRG1P02750 347 aa16.3■□□□□ 0.2
LIG1-219ENST00000600055 PDGFRBP09619 1106 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms