RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 M0R296 226 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 CALUO43852 315 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-206ENST00000595974 VNN2O95498 520 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 NR3C1P04150 777 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 RHOP08100 348 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 LAMP2P13473 410 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 PTPN2P17706 415 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 TWF1Q12792 350 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 TRAPPC11Q7Z392 1133 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 PDCL2Q8N4E4 241 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 TOP6BLQ8N6T0 577 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 CCDC127Q96BQ5 260 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 TIGD1Q96MW7 591 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 TMEM209Q96SK2 561 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 ZCWPW1Q9H0M4 648 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 KCNK12Q9HB15 430 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 RMND1Q9NWS8 449 aa17.43■□□□□ 0.38
TRIM28-206ENST00000595974 HOOK1Q9UJC3 728 aaKnown RBP17.43■□□□□ 0.38
TRIM28-206ENST00000595974 ANP32AP39687 249 aaKnown RBP17.42■□□□□ 0.38
TRIM28-206ENST00000595974 DUSP4Q13115 394 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 PNOCQ13519 176 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 TDGQ13569 410 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 NFIL3Q16649 462 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 SLC39A12Q504Y0 691 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 IQCEQ6IPM2 695 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 CENPPQ6IPU0 288 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 BMP8AQ7Z5Y6 402 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 LEMD2Q8NC56 503 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 ITFG1Q8TB96 612 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 C2orf15Q8WU43 125 aaKnown RBP17.42■□□□□ 0.38
TRIM28-206ENST00000595974 FGF13Q92913 245 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 ASIC4Q96FT7 647 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 HPDLQ96IR7 371 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 GZF1Q9H116 711 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-206ENST00000595974 MRPS23Q9Y3D9 190 aaKnown RBP17.42■□□□□ 0.38
TRIM28-206ENST00000595974 SNX9Q9Y5X1 595 aa17.42■□□□□ 0.38
TRIM28-206ENST00000595974 PTPRDP23468 1912 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 SMC2O95347 1197 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 AP3M2P53677 418 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 TSPY1Q01534 308 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 HTR4Q13639 388 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 SLC5A9Q2M3M2 681 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 SCARA3Q6AZY7 606 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 HFE2Q6ZVN8 426 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 DPH6Q7L8W6 267 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 NPAS3Q8IXF0 933 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 DCP1BQ8IZD4 617 aaKnown RBP17.41■□□□□ 0.38
TRIM28-206ENST00000595974 ADGRF2Q8IZF7 708 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 ATAD1Q8NBU5 361 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 SPPL2BQ8TCT7 592 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 PARD3BQ8TEW8 1205 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 ZNF512Q96ME7 567 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-206ENST00000595974 GSDMAQ96QA5 445 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 CORO1BQ9BR76 489 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 CRISPLD1Q9H336 500 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 CHMP5Q9NZZ3 219 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 CEP72Q9P209 647 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 DUSP12Q9UNI6 340 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 FRMD4BQ9Y2L6 1034 aa17.41■□□□□ 0.38
TRIM28-206ENST00000595974 KMT2EQ8IZD2 1858 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ANHXE9PGG2 379 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ZNF197O14709 1029 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 MAPK13O15264 365 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 MICAL2O94851 1124 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 COL9A1P20849 921 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 PCSK1P29120 753 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ALDH1A3P47895 512 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 LHX1P48742 406 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 EPHB3P54753 998 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 EPHA5P54756 1037 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 CLDN10P78369 228 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 MYL7Q01449 175 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 PRSS36Q5K4E3 855 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 CYP4A22Q5TCH4 519 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 MTSS1LQ765P7 747 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 PDZD4Q76G19 769 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-206ENST00000595974 LIMS2Q7Z4I7 341 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 PLEKHO2Q8TD55 490 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ACBD6Q9BR61 282 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 GTPBP4Q9BZE4 634 aaKnown RBP17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ASAH2Q9NR71 780 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 DDX43Q9NXZ2 648 aaKnown RBP17.4■□□□□ 0.38
TRIM28-206ENST00000595974 GDE1Q9NZC3 331 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 MAPK8IP1Q9UQF2 711 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 ASB3Q9Y575 518 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 DENND4CQ5VZ89 1909 aa17.4■□□□□ 0.38
TRIM28-206ENST00000595974 LRRIQ3A6PVS8 624 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 GABRDO14764 452 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 KINO60870 393 aaKnown RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 STAU1O95793 577 aaKnown RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 NR2F2P24468 414 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 TUFMP49411 452 aaKnown RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 CASP4P49662 377 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 NFE2Q16621 373 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 SOWAHAQ2M3V2 549 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 ZCWPW2Q504Y3 356 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 COBLL1Q53SF7 1204 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 INTS6LQ5JSJ4 861 aaKnown RBP17.39■□□□□ 0.37
TRIM28-206ENST00000595974 CEP135Q66GS9 1140 aa17.39■□□□□ 0.37
TRIM28-206ENST00000595974 ELOA2Q8IYF1 753 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms