RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 NIF3L1Q9GZT8 377 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 LACRTQ9GZZ8 138 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 RASSF4Q9H2L5 321 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 PDZD7Q9H5P4 517 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 METTL14Q9HCE5 456 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 KIAA1586Q9HCI6 787 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 CHST12Q9NRB3 414 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 RBAKQ9NYW8 714 aaPredicted RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 ARMCX3Q9UH62 379 aaPredicted RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 SALL4Q9UJQ4 1053 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 PADI3Q9ULW8 664 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 ST3GAL5Q9UNP4 418 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 TRIM33Q9UPN9 1127 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 SQORQ9Y6N5 450 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 UMODL1Q5DID0 1318 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 A0A0A0MRY4 1105 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 FSD2A1L4K1 749 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 FAM229AH3BQW9 127 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 OGTO15294 1046 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CBFA2T2O43439 604 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 PARNO95453 639 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 ATP1A3P13637 1013 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 RAG1P15918 1043 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 ZNF18P17022 549 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 PROZP22891 400 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CYP2C18P33260 490 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 YARSP54577 528 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 ATP11AP98196 1134 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 FANCCQ00597 558 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 PPP2R3AQ06190 1150 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 MCL1Q07820 350 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 MBTPS1Q14703 1052 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 KRT31Q15323 416 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 KYAT1Q16773 422 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 SEZ6Q53EL9 994 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 FKBP15Q5T1M5 1219 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 INTS8Q75QN2 995 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 FRMD5Q7Z6J6 570 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 DEFB128Q7Z7B8 93 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CBWD2Q8IUF1 395 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 ZC3H3Q8IXZ2 948 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 HACE1Q8IYU2 909 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 C7orf61Q8IZ16 206 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 DTWD1Q8N5C7 304 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 SEPT8Q92599 483 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CCDC127Q96BQ5 260 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 SCLYQ96I15 445 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 ACAP3Q96P50 834 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 FNBP1Q96RU3 617 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 TUBGCP2Q9BSJ2 902 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 HTATIP2Q9BUP3 242 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CCDC94Q9BW85 323 aaPredicted RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 APOL6Q9BWW8 343 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 RBCK1Q9BYM8 510 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 TRIM5Q9C035 493 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 HAPLN2Q9GZV7 340 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 WNT8AQ9H1J5 351 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 CDT1Q9H211 546 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 VPS16Q9H269 839 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 HSD3B7Q9H2F3 369 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 MMRN2Q9H8L6 949 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 AGO3Q9H9G7 860 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 RPF1Q9H9Y2 349 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 PTPRHQ9HD43 1115 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 ERVK-5Q9HDB9 667 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 DMAC2Q9NW81 257 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 TAB2Q9NYJ8 693 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 IFNKQ9P0W0 207 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 TBX21Q9UL17 535 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.75□□□□□ -1.49
LIG3-210ENST00000588109 STYXL1Q9Y6J8 313 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 KIAA0100Q14667 2235 aaKnown RBP5.75□□□□□ -1.49
LIG3-210ENST00000588109 TANC1Q9C0D5 1861 aa5.75□□□□□ -1.49
LIG3-210ENST00000588109 PDE2AO00408 941 aaPredicted RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 ABLIM1O14639 778 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 KIAA0355O15063 1070 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 MAPK13O15264 365 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 STX10O60499 249 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 NBNO60934 754 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 CPNE3O75131 537 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 CLSTN1O94985 981 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 IL18RAPO95256 599 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 TIMP1P01033 207 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 AFPP02771 609 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 ADRB2P07550 413 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 CLTAP09496 248 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 STAG3L1P0CL83 205 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 DLATP10515 647 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 ITGA4P13612 1032 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 TNNI1P19237 187 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 HOXA11P31270 313 aaPredicted RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 RFC2P35250 354 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 TNFSF9P41273 254 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 GSK3AP49840 483 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 RAB27AP51159 221 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 VAMP7P51809 220 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 COPB1P53618 953 aaKnown RBP5.74□□□□□ -1.49
LIG3-210ENST00000588109 UBASH3AP57075 661 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 PLCB3Q01970 1234 aa5.74□□□□□ -1.49
LIG3-210ENST00000588109 CYP24A1Q07973 514 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms