RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CCDC136Q96JN2 1154 aa5.71□□□□□ -1.5
SMCHD1-204ENST00000581226 P2RX7Q99572 595 aaKnown RBP5.71□□□□□ -1.5
SMCHD1-204ENST00000581226 ATP6V0A4Q9HBG4 840 aa5.71□□□□□ -1.5
SMCHD1-204ENST00000581226 MRPS18AQ9NVS2 196 aaKnown RBP5.71□□□□□ -1.5
SMCHD1-204ENST00000581226 TESQ9UGI8 421 aaKnown RBP5.71□□□□□ -1.5
SMCHD1-204ENST00000581226 TRGV11A0A075B6L2 103 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PRAMEF33A0A0G2JMD5 474 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 A0A1W2PS29 197 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PIPSLA2A3N6 862 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 KIF3BO15066 747 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PRAMEF10O60809 474 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 UNC5CO95185 931 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 ZBED1O96006 694 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 ANXA11P50995 505 aaKnown RBP5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 CACNB3P54284 484 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 MC2RQ01718 297 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 DYRK1AQ13627 763 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PREPLQ4J6C6 727 aaPredicted RBP5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 AMOTQ4VCS5 1084 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 RNF220Q5VTB9 566 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 FAM160B1Q5W0V3 765 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 GPR149Q86SP6 731 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 VRK3Q8IV63 474 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 LCORLQ8N3X6 602 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PSD4Q8NDX1 1056 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 FAM46DQ8NEK8 389 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 IL31RAQ8NI17 732 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 POC1BQ8TC44 478 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 ASB10Q8WXI3 467 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 UNKLQ9H9P5 680 aaKnown RBP5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 TBCCD1Q9NVR7 557 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 ETAA1Q9NY74 926 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 TPCN1Q9ULQ1 816 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 MED16Q9Y2X0 877 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 PLEKHM1Q9Y4G2 1056 aa5.7□□□□□ -1.5
SMCHD1-204ENST00000581226 DNAJB5O75953 348 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 HRGP04196 525 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 PIM1P11309 404 aaPredicted RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 CHRM3P20309 590 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 FDXRP22570 491 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC7A1P30825 629 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 ACVRL1P37023 503 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 ZEB1P37275 1124 aaPredicted RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 FAM193AP78312 1265 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 TCF15Q12870 199 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 GALEQ14376 348 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 ABHD17BQ5VST6 288 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 SP5Q6BEB4 398 aaPredicted RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 TAF2Q6P1X5 1199 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 DARS2Q6PI48 645 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 APOA5Q6Q788 366 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 ZNF627Q7L945 461 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 PPP1R32Q7Z5V6 425 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 ULK2Q8IYT8 1036 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 KBTBD7Q8WVZ9 684 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 LRTOMTQ8WZ04 291 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 PTCD3Q96EY7 689 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 C22orf23Q9BZE7 217 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 BHMT2Q9H2M3 363 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 CYP4F11Q9HBI6 524 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 GEMIN8Q9NWZ8 242 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 RAD54BQ9Y620 910 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 USP19O94966 1318 aa5.69□□□□□ -1.5
SMCHD1-204ENST00000581226 E7ENX8 843 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 GOLIM4O00461 696 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 BTN3A1O00481 513 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 THP07101 528 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 GRPP07492 148 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 EGR2P11161 476 aaPredicted RBP5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 RHCEP18577 417 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 GATA3P23771 443 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 RHDQ02161 417 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 TAP2Q03519 686 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SCAPQ12770 1279 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 ZNF783Q6ZMS7 281 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 ADGRG5Q8IZF4 528 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC16A11Q8NCK7 471 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 OR6B3Q8NGW1 331 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 FBXO41Q8TF61 875 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SNX19Q92543 992 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 ANKS1AQ92625 1134 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 FUBP1Q96AE4 644 aaKnown RBP5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 TTC17Q96AE7 1141 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 TRIM54Q9BYV2 358 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SCAND2PQ9GZW5 306 aaPredicted RBP5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SMOC2Q9H3U7 446 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 CASS4Q9NQ75 786 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 SRRDQ9UH36 339 aa5.68□□□□□ -1.5
SMCHD1-204ENST00000581226 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 F5H697 171 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 MYO1CO00159 1063 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 TBC1D4O60343 1298 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 MGEA5O60502 916 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 NPTX2P47972 431 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 KLF10Q13118 480 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 BOP1Q14137 746 aaKnown RBP5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 HLXQ14774 488 aaPredicted RBP5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 CYB5RLQ6IPT4 315 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 MICALCLQ6ZW33 695 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms