RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CGRRF1Q99675 332 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 ZCWPW1Q9H0M4 648 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 CRISPLD1Q9H336 500 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 AVENQ9NQS1 362 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-206ENST00000579558 DUSP12Q9UNI6 340 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 HUS1O60921 280 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 PRPF40AO75400 957 aaKnown RBP25.71■■□□□ 1.71
SHMT1-206ENST00000579558 TNNI1P19237 187 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 MYO1EQ12965 1108 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 PLD1Q13393 1074 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 HTR4Q13639 388 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 SLC5A9Q2M3M2 681 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 SLC39A12Q504Y0 691 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 CENPPQ6IPU0 288 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 NPAS3Q8IXF0 933 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 PDCL2Q8N4E4 241 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 KCTD10Q9H3F6 313 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 GDAP2Q9NXN4 497 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 CEP72Q9P209 647 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 L1RE1Q9UN81 338 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 SLC27A5Q9Y2P5 690 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 SNX9Q9Y5X1 595 aa25.71■■□□□ 1.71
SHMT1-206ENST00000579558 ANHXE9PGG2 379 aa25.7■■□□□ 1.7
SHMT1-206ENST00000579558 KIF20AO95235 890 aa25.7■■□□□ 1.7
SHMT1-206ENST00000579558 PDZD4Q76G19 769 aaPredicted RBP25.7■■□□□ 1.7
SHMT1-206ENST00000579558 SUGP1Q8IWZ8 645 aaKnown RBP25.7■■□□□ 1.7
SHMT1-206ENST00000579558 FMR1NBQ8N0W7 255 aaPredicted RBP25.7■■□□□ 1.7
SHMT1-206ENST00000579558 SLC44A3Q8N4M1 653 aa25.7■■□□□ 1.7
SHMT1-206ENST00000579558 ST13P5Q8NFI4 369 aaPredicted RBP25.7■■□□□ 1.7
SHMT1-206ENST00000579558 NUMBLQ9Y6R0 609 aa25.7■■□□□ 1.7
SHMT1-206ENST00000579558 PDXKO00764 312 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 ALDH1A3P47895 512 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 CYP4A22Q5TCH4 519 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 TRAPPC11Q7Z392 1133 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 TMEM86AQ8N2M4 240 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 FBXL6Q8N531 539 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 TTC9BQ8N6N2 239 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 HPDLQ96IR7 371 aa25.69■■□□□ 1.7
SHMT1-206ENST00000579558 ZNF197O14709 1029 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 NARSO43776 548 aaKnown RBP25.68■■□□□ 1.7
SHMT1-206ENST00000579558 CEBPBP17676 345 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 CDR1P51861 262 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 EPHB3P54753 998 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 KCNB1Q14721 858 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 PRSS36Q5K4E3 855 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 PARM1Q6UWI2 310 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 MTSS1LQ765P7 747 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 SLC9A9Q8IVB4 645 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 DCP1BQ8IZD4 617 aaKnown RBP25.68■■□□□ 1.7
SHMT1-206ENST00000579558 HS6ST3Q8IZP7 471 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 TOP6BLQ8N6T0 577 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 MCRS1Q96EZ8 462 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 ASAH2Q9NR71 780 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 DMAC2Q9NW81 257 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 HSFX1Q9UBD0 423 aa25.68■■□□□ 1.7
SHMT1-206ENST00000579558 PDGFBP01127 241 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-206ENST00000579558 NR3C1P04150 777 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 MYL4P12829 197 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 TSPY1Q01534 308 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 SMARCB1Q12824 385 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 LRRTM3Q86VH5 581 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 ADGRF2Q8IZF7 708 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 LEMD2Q8NC56 503 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 FGF14Q92915 247 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 TCEAL4Q96EI5 215 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 SEPT5Q99719 369 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-206ENST00000579558 DNAJC25Q9H1X3 360 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 DDX43Q9NXZ2 648 aaKnown RBP25.67■■□□□ 1.7
SHMT1-206ENST00000579558 GDE1Q9NZC3 331 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 FBXL21Q9UKT6 434 aa25.67■■□□□ 1.7
SHMT1-206ENST00000579558 CALUO43852 315 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-206ENST00000579558 SOAT2O75908 522 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 PLA2G5P39877 138 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 CCR2P41597 374 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 MYL7Q01449 175 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 FAM160A1Q05DH4 1040 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 PNOCQ13519 176 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 MGAT5BQ3V5L5 792 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 SPATA18Q8TC71 538 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 SPPL2BQ8TCT7 592 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 C2orf15Q8WU43 125 aaKnown RBP25.66■■□□□ 1.7
SHMT1-206ENST00000579558 TMEM174Q8WUU8 243 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 GZF1Q9H116 711 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-206ENST00000579558 ABI2Q9NYB9 513 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-206ENST00000579558 CIZ1Q9ULV3 898 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-206ENST00000579558 MAPK8IP1Q9UQF2 711 aa25.66■■□□□ 1.7
SHMT1-206ENST00000579558 MICAL2O94851 1124 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 SRFP11831 508 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 TUFMP49411 452 aaKnown RBP25.65■■□□□ 1.7
SHMT1-206ENST00000579558 CASP4P49662 377 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 EPHA5P54756 1037 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 SNW1Q13573 536 aaKnown RBP25.65■■□□□ 1.7
SHMT1-206ENST00000579558 SOWAHAQ2M3V2 549 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 OSTM1Q86WC4 334 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 ENGASEQ8NFI3 743 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 PLEKHO2Q8TD55 490 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 ZNF516Q92618 1163 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 ACBD6Q9BR61 282 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 RPP25Q9BUL9 199 aaKnown RBP25.65■■□□□ 1.7
SHMT1-206ENST00000579558 TRAF3IP3Q9Y228 551 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms