RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 AGPAT5Q9NUQ2 364 aa10.95□□□□□ -0.66
SS18-207ENST00000577636 EPS15L1Q9UBC2 864 aa10.95□□□□□ -0.66
SS18-207ENST00000577636 DPP7Q9UHL4 492 aa10.95□□□□□ -0.66
SS18-207ENST00000577636 SPTBN4Q9H254 2564 aa10.95□□□□□ -0.66
SS18-207ENST00000577636 DCHS1Q96JQ0 3298 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 GTPBP10A4D1E9 387 aaKnown RBP10.94□□□□□ -0.66
SS18-207ENST00000577636 F8W810 466 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 ASAP2O43150 1006 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 CYLC1P35663 651 aaPredicted RBP10.94□□□□□ -0.66
SS18-207ENST00000577636 ARL2P36404 184 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 MATR3P43243 847 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-207ENST00000577636 GOLGA8FQ08AF8 430 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 GOLGA8DPQ0D2H9 430 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 EXOC3L4Q17RC7 722 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 C17orf53Q8N3J3 647 aaPredicted RBP10.94□□□□□ -0.66
SS18-207ENST00000577636 TXLNBQ8N3L3 684 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 POMGNT1Q8WZA1 660 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 RABGGTAQ92696 567 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 NXPE3Q969Y0 559 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 GAD1Q99259 594 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 RPP25Q9BUL9 199 aaKnown RBP10.94□□□□□ -0.66
SS18-207ENST00000577636 LSM14BQ9BX40 385 aaKnown RBP10.94□□□□□ -0.66
SS18-207ENST00000577636 MINDY3Q9H8M7 445 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 DMAC2Q9NW81 257 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 MARCH5Q9NX47 278 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 MIOSQ9NXC5 875 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 HSPBP1Q9NZL4 362 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 CEP72Q9P209 647 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 DAAM1Q9Y4D1 1078 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 HES2Q9Y543 173 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 NUMBLQ9Y6R0 609 aa10.94□□□□□ -0.66
SS18-207ENST00000577636 CNTNAP2Q9UHC6 1331 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 TULP1O00294 542 aaPredicted RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 TGM5O43548 720 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 KRT37O76014 449 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 ERLIN2O94905 339 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 LDHAP00338 332 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 LAMP2P13473 410 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 GLULP15104 373 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 RPL17P18621 184 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 GARTP22102 1010 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 GLRA2P23416 452 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 MLH1P40692 756 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 CASP4P49662 377 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 SCNN1GP51170 649 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 GPC5P78333 572 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 KRT83P78385 493 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 BFSP1Q12934 665 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 UBXN11Q5T124 520 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 KIAA0319Q5VV43 1072 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 PHLDB3Q6NSJ2 640 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 SRGAP1Q7Z6B7 1085 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 COLGALT2Q8IYK4 626 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 CCDC170Q8IYT3 715 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 PRPF31Q8WWY3 499 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 BSNDQ8WZ55 320 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 SLC35C1Q96A29 364 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 ZNF707Q96C28 371 aaPredicted RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 CPB2Q96IY4 423 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 CNTNAP3BQ96NU0 1288 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 COLEC11Q9BWP8 271 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 EIF2AQ9BY44 585 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 CNTNAP3Q9BZ76 1288 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 DEF6Q9H4E7 631 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 PCIF1Q9H4Z3 704 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 TMEM134Q9H6X4 195 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 LUC7LQ9NQ29 371 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 PLCB1Q9NQ66 1216 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 SPATA6Q9NWH7 488 aaPredicted RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 TRMT1Q9NXH9 659 aaKnown RBP10.93□□□□□ -0.66
SS18-207ENST00000577636 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.93□□□□□ -0.66
SS18-207ENST00000577636 DLGAP2Q9P1A6 1054 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 ARHGAP28Q9P2N2 729 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 NCDNQ9UBB6 729 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 SIK3Q9Y2K2 1263 aa10.93□□□□□ -0.66
SS18-207ENST00000577636 ARL5CA6NH57 179 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 P4HA2O15460 535 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 LAMTOR5O43504 91 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 CCDC172P0C7W6 258 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 TNNT1P13805 278 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 FSHRP23945 695 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 HOXA11P31270 313 aaPredicted RBP10.92□□□□□ -0.66
SS18-207ENST00000577636 FMO5P49326 533 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 KLK7P49862 253 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 VAMP7P51809 220 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 NTHL1P78549 312 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 CDK17Q00537 523 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 MYL7Q01449 175 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 DSG1Q02413 1049 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 CSTF1Q05048 431 aaKnown RBP10.92□□□□□ -0.66
SS18-207ENST00000577636 LAMTOR4Q0VGL1 99 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 UBXN2BQ14CS0 331 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 SPA17Q15506 151 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 SNRNP35Q16560 246 aaKnown RBP10.92□□□□□ -0.66
SS18-207ENST00000577636 TMEM132AQ24JP5 1023 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 SFMBT2Q5VUG0 894 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 RRAGAQ7L523 313 aa10.92□□□□□ -0.66
SS18-207ENST00000577636 GRASPQ7Z6J2 395 aaPredicted RBP10.92□□□□□ -0.66
SS18-207ENST00000577636 TMEM139Q8IV31 216 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms