RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C20orf194Q5TEA3 1177 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 ANKRD45Q5TZF3 282 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 RNF19BQ6ZMZ0 732 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 FANCBQ8NB91 859 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 EXOC6Q8TAG9 804 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 SETD7Q8WTS6 366 aaKnown RBP17.86■□□□□ 0.45
VPS53-218ENST00000575207 GJA10Q969M2 543 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 CDC6Q99741 560 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 NFKBIZQ9BYH8 718 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 SMG9Q9H0W8 520 aaKnown RBP17.86■□□□□ 0.45
VPS53-218ENST00000575207 TAF6LQ9Y6J9 622 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 CNTNAP5Q8WYK1 1306 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 USP9YO00507 2555 aaPredicted RBP17.85■□□□□ 0.45
VPS53-218ENST00000575207 GABRR2P28476 465 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 CYP4A11Q02928 519 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 EMC2Q15006 297 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 CTXN3Q4LDR2 81 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 ARID2Q68CP9 1835 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 DBX2Q6ZNG2 339 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 TTC30AQ86WT1 665 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 SPIRE2Q8WWL2 714 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 PPP1R10Q96QC0 940 aaKnown RBP17.85■□□□□ 0.45
VPS53-218ENST00000575207 ZDHHC5Q9C0B5 715 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 FZD8Q9H461 694 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 ASB3Q9Y575 518 aa17.85■□□□□ 0.45
VPS53-218ENST00000575207 CEP192Q8TEP8 1941 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 FBN2P35556 2912 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 CCDC69A6NI79 296 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 HIP1O00291 1037 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 EDIL3O43854 480 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 ZNF883P0CG24 379 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 ADSSP30520 456 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 SEMG2Q02383 582 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 RPL6Q02878 288 aaKnown RBP17.84■□□□□ 0.45
VPS53-218ENST00000575207 TFDP1Q14186 410 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 PDGFRLQ15198 375 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 PLEKHG6Q3KR16 790 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 PREPLQ4J6C6 727 aaPredicted RBP17.84■□□□□ 0.45
VPS53-218ENST00000575207 NFXL1Q6ZNB6 911 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 DNAJB7Q7Z6W7 309 aaPredicted RBP17.84■□□□□ 0.45
VPS53-218ENST00000575207 PSMG2Q969U7 264 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 MED8Q96G25 268 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 SLC46A2Q9BY10 475 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 ECT2Q9H8V3 914 aa17.84■□□□□ 0.45
VPS53-218ENST00000575207 BMP2KQ9NSY1 1161 aaPredicted RBP17.84■□□□□ 0.45
VPS53-218ENST00000575207 BOD1L1Q8NFC6 3051 aa17.83■□□□□ 0.45
VPS53-218ENST00000575207 K7EQS6 105 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 ADAMTS3O15072 1205 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 VNN2O95498 520 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 SCRN1Q12765 414 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 ZNF280DQ6N043 979 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 SLC36A4Q6YBV0 504 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 TMPRSS12Q86WS5 348 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 CCDC33Q8N5R6 958 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 PNMA5Q96PV4 448 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 IL25Q9H293 177 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 PRDM16Q9HAZ2 1276 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 ZMYM5Q9UJ78 669 aa17.83■□□□□ 0.44
VPS53-218ENST00000575207 FUT2Q10981 343 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 GRIK2Q13002 908 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 CAPSQ13938 189 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 CMTM8Q8IZV2 173 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 CPA6Q8N4T0 437 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 DEFB119Q8N690 84 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 TTC9Q92623 222 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 CRISPLD1Q9H336 500 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 FAM124BQ9H5Z6 455 aaPredicted RBP17.82■□□□□ 0.44
VPS53-218ENST00000575207 GOLGA2P5Q9HBQ8 144 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 CCL26Q9Y258 94 aa17.82■□□□□ 0.44
VPS53-218ENST00000575207 ANTXRLA6NF34 631 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 SH2B2O14492 632 aaPredicted RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 CPB1P15086 417 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 LIFRP42702 1097 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 ALDH1A3P47895 512 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 QARSP47897 775 aaKnown RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 MRPS21P82921 87 aaKnown RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 CYP4F8P98187 520 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 SERINC3Q13530 473 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 PTPRNQ16849 979 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 ZNF574Q6ZN55 896 aaPredicted RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 PRICKLE2Q7Z3G6 844 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 RAB11FIP4Q86YS3 637 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 SLC41A1Q8IVJ1 513 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 SPACA3Q8IXA5 215 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 REXO1Q8N1G1 1221 aaKnown RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 FGF11Q92914 225 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 CCDC136Q96JN2 1154 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 MTRQ99707 1265 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 XPNPEP1Q9NQW7 623 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 SUSD2Q9UGT4 822 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 V9GY48 417 aaPredicted RBP17.81■□□□□ 0.44
VPS53-218ENST00000575207 CABIN1Q9Y6J0 2220 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 ITPR3Q14573 2671 aa17.81■□□□□ 0.44
VPS53-218ENST00000575207 ESYT2A0FGR8 921 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 GOLGA8CPA6NN73 597 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 DKC1O60832 514 aaKnown RBP eCLIP17.8■□□□□ 0.443e-11■■■□□ 15.6
VPS53-218ENST00000575207 SEC13P55735 322 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 DUSP4Q13115 394 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 RTP5Q14D33 572 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 GLRA4Q5JXX5 417 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms