RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 YWHAHQ04917 246 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 BFSP1Q12934 665 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 DUOXA1Q1HG43 343 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 LYSMD4Q5XG99 296 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 EEF1DP3Q658K8 133 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 TENM4Q6N022 2769 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 DNAJB7Q7Z6W7 309 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 RASSF3Q86WH2 238 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 TMEFF1Q8IYR6 380 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 MINDY1Q8N5J2 469 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 CEP76Q8TAP6 659 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 CD101Q93033 1021 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 OXCT2Q9BYC2 517 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 SMG9Q9H0W8 520 aaKnown RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 GPRC5CQ9NQ84 441 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 TMEM74BQ9NUR3 256 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 ZMYM5Q9UJ78 669 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 SLC6A14Q9UN76 642 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 APOBEC2Q9Y235 224 aaKnown RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 ZNF638Q14966 1978 aaKnown RBP14.27□□□□□ -0.12
CCDC40-208ENST00000572270 NID2Q14112 1375 aa14.27□□□□□ -0.12
CCDC40-208ENST00000572270 SLITRK3O94933 977 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 ARSAP15289 507 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 RPL9P32969 192 aaKnown RBP14.27□□□□□ -0.13
CCDC40-208ENST00000572270 AVPR1AP37288 418 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 LARP1BQ659C4 914 aaKnown RBP14.27□□□□□ -0.13
CCDC40-208ENST00000572270 KRT25Q7Z3Z0 450 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 CPA6Q8N4T0 437 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 PNPLA1Q8N8W4 532 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 MCPH1Q8NEM0 835 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 MDGA1Q8NFP4 955 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 DEPTORQ8TB45 409 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 TBC1D32Q96NH3 1257 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 EIF2AK1Q9BQI3 630 aaKnown RBP14.27□□□□□ -0.13
CCDC40-208ENST00000572270 CCDC94Q9BW85 323 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-208ENST00000572270 FSCN3Q9NQT6 498 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 DKK4Q9UBT3 224 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 PCDHB8Q9UN66 801 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 USP20Q9Y2K6 914 aa14.27□□□□□ -0.13
CCDC40-208ENST00000572270 APC2O95996 2303 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 ATXN7O15265 892 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-208ENST00000572270 CCNT1O60563 726 aaKnown RBP14.26□□□□□ -0.13
CCDC40-208ENST00000572270 LYPLA2O95372 231 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 BAG4O95429 457 aaKnown RBP14.26□□□□□ -0.13
CCDC40-208ENST00000572270 OR4Q2P0C623 313 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 GJA4P35212 333 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 PTGER3P43115 390 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 ABCG1P45844 678 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 VEPH1Q14D04 833 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 PDGFRLQ15198 375 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 SPDYCQ5MJ68 293 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 ATF7IP2Q5U623 682 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 NAIF1Q69YI7 327 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-208ENST00000572270 RABEPKQ7Z6M1 372 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 NEK8Q86SG6 692 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 SLFN12Q8IYM2 578 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 CMTM8Q8IZV2 173 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 DAGLBQ8NCG7 672 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 CRELD1Q96HD1 420 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 CRISPLD1Q9H336 500 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 KIF9Q9HAQ2 790 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 PILRBQ9UKJ0 227 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 TBX20Q9UMR3 447 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 SLC27A5Q9Y2P5 690 aa14.26□□□□□ -0.13
CCDC40-208ENST00000572270 A0A087WV48 116 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 J3QKU1 62 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 M0R2N6 131 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 VNN2O95498 520 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 HMGB1P09429 215 aaKnown RBP14.25□□□□□ -0.13
CCDC40-208ENST00000572270 CD59P13987 128 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 ATP2B1P20020 1258 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 P2RY2P41231 377 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 GPR17Q13304 367 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 BYSLQ13895 437 aaKnown RBP14.25□□□□□ -0.13
CCDC40-208ENST00000572270 TAF12Q16514 161 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 PEAR1Q5VY43 1037 aaPredicted RBP14.25□□□□□ -0.13
CCDC40-208ENST00000572270 GALNT17Q6IS24 598 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 USP37Q86T82 979 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 SCUBE3Q8IX30 993 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 TRIM22Q8IYM9 498 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 WHAMMQ8TF30 809 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 RLN3Q8WXF3 142 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 HAS1Q92839 578 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 CAMK1GQ96NX5 476 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 NAP1L4Q99733 375 aaKnown RBP14.25□□□□□ -0.13
CCDC40-208ENST00000572270 CCDC113Q9H0I3 377 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 STK24Q9Y6E0 443 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 PTPRDP23468 1912 aa14.25□□□□□ -0.13
CCDC40-208ENST00000572270 PTPRBP23467 1997 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 URB1O60287 2271 aaKnown RBP14.24□□□□□ -0.13
CCDC40-208ENST00000572270 OR6C75A6NL08 312 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 SH3BP5O60239 455 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 EDN1P05305 212 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 SYPP08247 313 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 SERPINF2P08697 491 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 IFNAR1P17181 557 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 ITPKAP23677 461 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 GRM5P41594 1212 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 SEC13P55735 322 aa14.24□□□□□ -0.13
CCDC40-208ENST00000572270 OSTNP61366 133 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms