RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PPP2R5EQ16537 467 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CFAP221Q4G0U5 840 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 LCE2AQ5TA79 106 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 TWF2Q6IBS0 349 aaKnown RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 JADE1Q6IE81 842 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 GDF6Q6KF10 455 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 TMEM270Q6UE05 265 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 ALKAL1Q6UXT8 129 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CTAGE6Q86UF2 777 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CTAGE4Q8IX94 777 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 C1orf127Q8N9H9 656 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 RBBP8NLQ8NC74 664 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 TMEM35BQ8NCS4 154 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 LNX1Q8TBB1 728 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 SPATA18Q8TC71 538 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 GOLGA1Q92805 767 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CPB2Q96IY4 423 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 SNX27Q96L92 541 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 NAP1L3Q99457 506 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 FTHL17Q9BXU8 183 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 BCO2Q9BYV7 579 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 SENP6Q9GZR1 1112 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 XYLT2Q9H1B5 865 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 LHX5Q9H2C1 402 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 STARD7Q9NQZ5 370 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CISHQ9NSE2 258 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 WDR35Q9P2L0 1181 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 GTF3C4Q9UKN8 822 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 STRIP2Q9ULQ0 834 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 SNX12Q9UMY4 172 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 PCDHGC3Q9UN70 934 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 PHF24Q9UPV7 400 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 NUB1Q9Y5A7 615 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CDY2AQ9Y6F7 541 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 SCINQ9Y6U3 715 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 NCANO14594 1321 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 GRID2IPA4D2P6 1211 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 MYADML2A6NDP7 307 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 CYP1A1P04798 512 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 CALB1P05937 261 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 VDRP11473 427 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 ITGA4P13612 1032 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 DESP17661 470 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 THPOP40225 353 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 SLC1A1P43005 524 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 ZNF132P52740 706 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 FMO1Q01740 532 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 CENPCQ03188 943 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 MGAT3Q09327 533 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 TMEM62Q0P6H9 643 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 RPS6KA1Q15418 735 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 PKN2Q16513 984 aaKnown RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 CLEC16AQ2KHT3 1053 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 WDR72Q3MJ13 1102 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 SV2CQ496J9 727 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 SEZ6Q53EL9 994 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 MEI1Q5TIA1 1274 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 CCDC181Q5TID7 509 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 MRPL10Q7Z7H8 261 aaKnown RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 SLFN11Q7Z7L1 901 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 NOP9Q86U38 636 aaKnown RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 SLC47A2Q86VL8 602 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 PHF13Q86YI8 300 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 EFCAB13Q8IY85 973 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 UBL4BQ8N7F7 174 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 SLC43A3Q8NBI5 491 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 DDX1Q92499 740 aaKnown RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 LENG1Q96BZ8 264 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 ZBTB10Q96DT7 871 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 ZNF668Q96K58 619 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 UROC1Q96N76 676 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 RPS6KC1Q96S38 1066 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 NCAPGQ9BPX3 1015 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 PI4K2AQ9BTU6 479 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 APOBEC3GQ9HC16 384 aaKnown RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 ARGLU1Q9NWB6 273 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 SNTG2Q9NY99 539 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 PARP2Q9UGN5 583 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 AJAP1Q9UKB5 411 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 AMFRQ9UKV5 643 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 BARX2Q9UMQ3 279 aaPredicted RBP8.49□□□□□ -1.05
VPS39-213ENST00000570062 ST3GAL5Q9UNP4 418 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 AGAP1Q9UPQ3 857 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 TRIM17Q9Y577 477 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 PTPRJQ12913 1337 aa8.49□□□□□ -1.05
VPS39-213ENST00000570062 A0A0U1RQF3 1178 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 SMIM28A0A1B0GU29 152 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 ARVCFO00192 962 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 THAP12O43422 761 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 PALMO75781 387 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 MOCS3O95396 460 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 EOMESO95936 686 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CYP1A2P05177 515 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 NFICP08651 508 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 UNGP13051 313 aaPredicted RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 CHRNB2P17787 502 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 LRPAP1P30533 357 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 CDH5P33151 784 aaPredicted RBP8.48□□□□□ -1.05
VPS39-213ENST00000570062 ASPAP45381 313 aa8.48□□□□□ -1.05
VPS39-213ENST00000570062 INCA1Q0VD86 236 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms