RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 DSEQ9UL01 958 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 CTNND2Q9UQB3 1225 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 FRMD4BQ9Y2L6 1034 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 NME7Q9Y5B8 376 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 SNX9Q9Y5X1 595 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 DOCK8Q8NF50 2099 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 PTPRDP23468 1912 aa10.54□□□□□ -0.72
CLK3-220ENST00000567992 CCDC195A0A1B0GUA6 201 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 ARHGEF37A1IGU5 675 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 MTMR11A4FU01 709 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 LOC730098B7Z3J9 87 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 GABRDO14764 452 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 IKBKBO14920 756 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 CETN3O15182 167 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 SLC16A3O15427 465 aaKnown RBP10.53□□□□□ -0.72
CLK3-220ENST00000567992 HNRNPA1P09651 372 aaKnown RBP eCLIP10.53□□□□□ -0.72
CLK3-220ENST00000567992 CPB1P15086 417 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 PPP1R2P41236 205 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 MTHFRP42898 656 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 VAMP7P51809 220 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 AP3M2P53677 418 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 ARPP19P56211 112 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 MYL6P60660 151 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 FKBP3Q00688 224 aaKnown RBP10.53□□□□□ -0.72
CLK3-220ENST00000567992 MYO1EQ12965 1108 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 GPR17Q13304 367 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 CCDC142Q17RM4 750 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 LIN9Q5TKA1 542 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 KLHL10Q6JEL2 608 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 RBM43Q6ZSC3 357 aaKnown RBP10.53□□□□□ -0.72
CLK3-220ENST00000567992 SV2AQ7L0J3 742 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 LRRTM3Q86VH5 581 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 TMEM86AQ8N2M4 240 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 NELFBQ8WX92 580 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 ELMO3Q96BJ8 720 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 PKMYT1Q99640 499 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 TSG101Q99816 390 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 PHF7Q9BWX1 381 aaPredicted RBP10.53□□□□□ -0.72
CLK3-220ENST00000567992 PRKD2Q9BZL6 878 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 NUP62CLQ9H1M0 184 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 AFF4Q9UHB7 1163 aaKnown RBP10.53□□□□□ -0.72
CLK3-220ENST00000567992 INSL5Q9Y5Q6 135 aa10.53□□□□□ -0.72
CLK3-220ENST00000567992 CCL16O15467 120 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 HUS1O60921 280 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 N4BP1O75113 896 aaKnown RBP10.52□□□□□ -0.73
CLK3-220ENST00000567992 LRRN2O75325 713 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 EPB41P11171 864 aaKnown RBP10.52□□□□□ -0.73
CLK3-220ENST00000567992 ATICP31939 592 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 GCLMP48507 274 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 ADCY1Q08828 1119 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 PAK1Q13153 545 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 BIRC3Q13489 604 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 STIM1Q13586 685 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 NCOA4Q13772 614 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 UVSSAQ2YD98 709 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 PPM1LQ5SGD2 360 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 ATAT1Q5SQI0 421 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 ELMSAN1Q6PJG2 1045 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 CYP26C1Q6V0L0 522 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 RTL10Q7L3V2 364 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 DPH6Q7L8W6 267 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 ADGRF2Q8IZF7 708 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 GJD3Q8N144 294 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 TTC9BQ8N6N2 239 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 SPATA18Q8TC71 538 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 SMG7Q92540 1137 aaKnown RBP10.52□□□□□ -0.73
CLK3-220ENST00000567992 KHSRPQ92945 711 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLK3-220ENST00000567992 RIPOR3Q96MK2 946 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 PGLYRP2Q96PD5 576 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 MRPL45Q9BRJ2 306 aaKnown RBP10.52□□□□□ -0.73
CLK3-220ENST00000567992 WDR6Q9NNW5 1121 aaKnown RBP10.52□□□□□ -0.73
CLK3-220ENST00000567992 TMLHEQ9NVH6 421 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 MAFFQ9ULX9 164 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 POLIQ9UNA4 740 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 CLUHO75153 1309 aa10.52□□□□□ -0.73
CLK3-220ENST00000567992 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 C2CD4DB7Z1M9 353 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 NRG2O14511 850 aaPredicted RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 TACC1O75410 805 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 ASS1P00966 412 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 HLA-DRAP01903 254 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 KRT13P13646 458 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 WARSP23381 471 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 ACAT1P24752 427 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 STX17P56962 302 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 NTHL1P78549 312 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 TRPC3Q13507 836 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 ZNF699Q32M78 642 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 DPCR1Q3MIW9 517 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 WDR72Q3MJ13 1102 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 SLC39A12Q504Y0 691 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 INTS6LQ5JSJ4 861 aaKnown RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 CCDC149Q6ZUS6 474 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 METTL23Q86XA0 190 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 ATAD1Q8NBU5 361 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 TAS1R2Q8TE23 839 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 SLC35C1Q96A29 364 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 SYAP1Q96A49 352 aaPredicted RBP10.51□□□□□ -0.73
CLK3-220ENST00000567992 CEP63Q96MT8 703 aa10.51□□□□□ -0.73
CLK3-220ENST00000567992 ACBD6Q9BR61 282 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms