RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ATP2C2O75185 946 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 MOSPD3O75425 235 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ASS1P00966 412 aaKnown RBP10.59□□□□□ -0.71
CLN3-220ENST00000566040 C8AP07357 584 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 POU2F2P09086 479 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ODC1P11926 461 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ATF2P15336 505 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 TNNI1P19237 187 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 LMO2P25791 158 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 HOXA9P31269 272 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 CCR2P41597 374 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 GCLMP48507 274 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 VAMP7P51809 220 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 STX17P56962 302 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 RBP5P82980 135 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 CREMQ03060 361 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 LRRC63Q05C16 580 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 SLC5A9Q2M3M2 681 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 SPOPLQ6IQ16 392 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 PDXDC1Q6P996 788 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 DSTYKQ6XUX3 929 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ADHFE1Q8IWW8 467 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 TRIML1Q8N9V2 468 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 APPL2Q8NEU8 664 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 SLC7A14Q8TBB6 771 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 TAS1R2Q8TE23 839 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 CCDC47Q96A33 483 aaKnown RBP10.59□□□□□ -0.71
CLN3-220ENST00000566040 DHTKD1Q96HY7 919 aaPredicted RBP10.59□□□□□ -0.71
CLN3-220ENST00000566040 HPDLQ96IR7 371 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ANKRD36BP1Q96IX9 119 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 ZNF560Q96MR9 790 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 PLEKHA4Q9H4M7 779 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 CEP72Q9P209 647 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 HMGXB4Q9UGU5 601 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 INSL5Q9Y5Q6 135 aa10.59□□□□□ -0.71
CLN3-220ENST00000566040 NCANO14594 1321 aa10.58□□□□□ -0.71
CLN3-220ENST00000566040 TICRRQ7Z2Z1 1910 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ZNF318Q5VUA4 2279 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 CCDC195A0A1B0GUA6 201 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 C2CD4DB7Z1M9 353 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 IKBKBO14920 756 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 SLC16A3O15427 465 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 SOAT2O75908 522 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 HLA-DRAP01903 254 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 TNNC2P02585 160 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 KRT19P08727 400 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ATF6P18850 670 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 PAX3P23760 479 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ACAT1P24752 427 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 PSMC2P35998 433 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 PNPLA4P41247 253 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ASPAP45381 313 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 RAP1GAPP47736 663 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 MARSP56192 900 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 ITIH3Q06033 890 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 GPR17Q13304 367 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 NCOA4Q13772 614 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 AAK1Q2M2I8 961 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 KLHL10Q6JEL2 608 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 TMC8Q8IU68 726 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ADGRF2Q8IZF7 708 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 TOP6BLQ8N6T0 577 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ATAD1Q8NBU5 361 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 LMO3Q8TAP4 145 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 CACTINQ8WUQ7 758 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 PGLYRP2Q96PD5 576 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 MYADMQ96S97 322 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 UHRF1Q96T88 793 aaPredicted RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 PI4K2AQ9BTU6 479 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 BCO2Q9BYV7 579 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 PRKD2Q9BZL6 878 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 NUP62CLQ9H1M0 184 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 DPEP3Q9H4B8 488 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 ZDHHC7Q9NXF8 308 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 DNMT3BQ9UBC3 853 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 AFF4Q9UHB7 1163 aaKnown RBP10.58□□□□□ -0.72
CLN3-220ENST00000566040 COQ4Q9Y3A0 265 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 YIPF1Q9Y548 306 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 SNX9Q9Y5X1 595 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 CLUHO75153 1309 aa10.58□□□□□ -0.72
CLN3-220ENST00000566040 MYBPHLA2RUH7 354 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 OR6C75A6NL08 312 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 H7C4K7 107 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 CCL16O15467 120 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 KIF20AO95235 890 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 WARSP23381 471 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 CACNA2D1P54289 1103 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 CDH8P55286 799 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 ARPP19P56211 112 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 FKBP3Q00688 224 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 ADCY1Q08828 1119 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 PUS10Q3MIT2 529 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 INTS6LQ5JSJ4 861 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 PRSS36Q5K4E3 855 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 TPGS2Q68CL5 300 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 DPY19L2P1Q6NXN4 242 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 FAM171BQ6P995 826 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 C11orf57Q6ZUT1 292 aaPredicted RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 INTS8Q75QN2 995 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 TRIM59Q8IWR1 403 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms