RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 TMEM176AQ96HP8 235 aa14.85□□□□□ -0.03
CLK3-209ENST00000562670 CASD1Q96PB1 797 aa14.85□□□□□ -0.03
CLK3-209ENST00000562670 MMS19Q96T76 1030 aa14.85□□□□□ -0.03
CLK3-209ENST00000562670 NT5C1AQ9BXI3 368 aa14.85□□□□□ -0.03
CLK3-209ENST00000562670 PRDM5Q9NQX1 630 aaPredicted RBP14.85□□□□□ -0.03
CLK3-209ENST00000562670 TRMT1Q9NXH9 659 aaKnown RBP14.85□□□□□ -0.03
CLK3-209ENST00000562670 L1RE1Q9UN81 338 aa14.85□□□□□ -0.03
CLK3-209ENST00000562670 A0A0A6YYK5 440 aaPredicted RBP14.84□□□□□ -0.03
CLK3-209ENST00000562670 CARNS1A5YM72 827 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CASTOR2A6NHX0 329 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 M0QZQ0 153 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 GABRDO14764 452 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 RTN2O75298 545 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CYP1A1P04798 512 aaPredicted RBP14.84□□□□□ -0.03
CLK3-209ENST00000562670 CYP11A1P05108 521 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 MMEP08473 750 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 VDRP11473 427 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 NDST1P52848 882 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CDH8P55286 799 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CENPCQ03188 943 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 PPIGQ13427 754 aaKnown RBP eCLIP14.84□□□□□ -0.034e-10■■■□□ 16.2
CLK3-209ENST00000562670 CLEC16AQ2KHT3 1053 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CCDC122Q5T0U0 273 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 DCLRE1AQ6PJP8 1040 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 ADGRF2Q8IZF7 708 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 LRRC43Q8N309 656 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 C3orf58Q8NDZ4 430 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 ZNF606Q8WXB4 792 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 CALR3Q96L12 384 aaKnown RBP14.84□□□□□ -0.03
CLK3-209ENST00000562670 TMEM175Q9BSA9 504 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 ZNF518BQ9C0D4 1074 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 ELOVL4Q9GZR5 314 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 IL23AQ9NPF7 189 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 ACP6Q9NPH0 428 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 DSEQ9UL01 958 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 NCANO14594 1321 aa14.84□□□□□ -0.03
CLK3-209ENST00000562670 FNDC1Q4ZHG4 1894 aaPredicted RBP14.83□□□□□ -0.04
CLK3-209ENST00000562670 ANKRD62A6NC57 917 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 CYB561D2O14569 222 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 THAP12O43422 761 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 AMHP03971 560 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 H2AFZP0C0S5 128 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 TMEM253P0C7T8 217 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 ODC1P11926 461 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 UNGP13051 313 aaPredicted RBP14.83□□□□□ -0.04
CLK3-209ENST00000562670 CSF2RAP15509 400 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 TYMPP19971 482 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 TCEAL1Q15170 157 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 PTPN14Q15678 1187 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 TAF3Q5VWG9 929 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 CD300LGQ6UXG3 332 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 H2AFVQ71UI9 128 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 PALB2Q86YC2 1186 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 CRYBG2Q8N1P7 616 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 PDCL2Q8N4E4 241 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 RNF10Q8N5U6 811 aaKnown RBP14.83□□□□□ -0.04
CLK3-209ENST00000562670 TRIM11Q96F44 468 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 SUSD3Q96L08 255 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 SENP8Q96LD8 212 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 TWNKQ96RR1 684 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 PCDHB18PQ96TA0 734 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 MRPL45Q9BRJ2 306 aaKnown RBP14.83□□□□□ -0.04
CLK3-209ENST00000562670 LACRTQ9GZZ8 138 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 LHX5Q9H2C1 402 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 RC3H2Q9HBD1 1191 aaKnown RBP14.83□□□□□ -0.04
CLK3-209ENST00000562670 PRKAG2Q9UGJ0 569 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 HMGXB4Q9UGU5 601 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 STXBP5LQ9Y2K9 1186 aa14.83□□□□□ -0.04
CLK3-209ENST00000562670 RCCD1A6NED2 376 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 O00370 1275 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 DGKIO75912 1065 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 B3GAT3O94766 335 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 DDHD2O94830 711 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 LHX1P48742 406 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 NOMO3P69849 1222 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 RNASELQ05823 741 aaKnown RBP14.82□□□□□ -0.04
CLK3-209ENST00000562670 ARHGAP17Q68EM7 881 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 TOP1MTQ969P6 601 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 VCPIP1Q96JH7 1222 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 TNIP3Q96KP6 325 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 FAM193BQ96PV7 902 aaPredicted RBP14.82□□□□□ -0.04
CLK3-209ENST00000562670 ZSWIM1Q9BR11 485 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 PAAF1Q9BRP4 392 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 HTATIP2Q9BUP3 242 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 SNX25Q9H3E2 840 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 SEPT11Q9NVA2 429 aaKnown RBP14.82□□□□□ -0.04
CLK3-209ENST00000562670 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.82□□□□□ -0.04
CLK3-209ENST00000562670 CEP83Q9Y592 693 aa14.82□□□□□ -0.04
CLK3-209ENST00000562670 KIF5CO60282 957 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 B4GALT3O60512 393 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 KIF4AO95239 1232 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 MYBL1P10243 752 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 BRD2P25440 801 aaKnown RBP14.81□□□□□ -0.04
CLK3-209ENST00000562670 HADHBP55084 474 aaKnown RBP14.81□□□□□ -0.04
CLK3-209ENST00000562670 WDR5P61964 334 aaKnown RBP14.81□□□□□ -0.04
CLK3-209ENST00000562670 ETF1P62495 437 aaKnown RBP14.81□□□□□ -0.04
CLK3-209ENST00000562670 CNGA2Q16280 664 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 TIGD5Q53EQ6 642 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 ZNF394Q53GI3 561 aa14.81□□□□□ -0.04
CLK3-209ENST00000562670 SGO2Q562F6 1265 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms