RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 DENND4CQ5VZ89 1909 aa20.58■□□□□ 0.88
VPS35-202ENST00000561713 ZNF638Q14966 1978 aaKnown RBP20.57■□□□□ 0.88
VPS35-202ENST00000561713 A0A087X0B3 334 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 TULP1O00294 542 aaPredicted RBP20.57■□□□□ 0.88
VPS35-202ENST00000561713 ARNTLO00327 626 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 SOAT2O75908 522 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 CHRNB1P11230 501 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 EPHA5P54756 1037 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 KCNA1Q09470 495 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 SPATA1Q5VX52 437 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 C9orf57Q5W0N0 161 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 PRR23BQ6ZRT6 265 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 USP37Q86T82 979 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 MFSD6LQ8IWD5 586 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 ZSWIM2Q8NEG5 633 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 BEST2Q8NFU1 509 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 DEPDC1BQ8WUY9 529 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 RSPRY1Q96DX4 576 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 IER2Q9BTL4 223 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 FGFBP2Q9BYJ0 223 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 ASAH2Q9NR71 780 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 STK17AQ9UEE5 414 aa20.57■□□□□ 0.88
VPS35-202ENST00000561713 SRPRBQ9Y5M8 271 aaKnown RBP20.57■□□□□ 0.88
VPS35-202ENST00000561713 HEPACAM2A8MVW5 462 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 XPOTO43592 962 aaKnown RBP20.56■□□□□ 0.88
VPS35-202ENST00000561713 OAZ2O95190 189 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 DDIT3P35638 169 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 CXCL12P48061 93 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 CASP5P51878 434 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 WNT7BP56706 349 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 DMWDQ09019 674 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 KYAT1Q16773 422 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 RRAGBQ5VZM2 374 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 OVOS1Q6IE37 1185 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 EFCAB13Q8IY85 973 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 OR10T2Q8NGX3 314 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 SHKBP1Q8TBC3 707 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 SENP8Q96LD8 212 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 DNAJC25Q9H1X3 360 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 CCDC39Q9UFE4 941 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 AGO2Q9UKV8 859 aaKnown RBP20.56■□□□□ 0.88
VPS35-202ENST00000561713 MAFFQ9ULX9 164 aa20.56■□□□□ 0.88
VPS35-202ENST00000561713 MTMR11A4FU01 709 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 PPP1R37O75864 691 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 ADRB2P07550 413 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 ODC1P11926 461 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 TXLNAP40222 546 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 LILRA4P59901 499 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 DUSP4Q13115 394 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 GPIHBP1Q8IV16 184 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 LEMD2Q8NC56 503 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 POMGNT1Q8WZA1 660 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 DNAJC19Q96DA6 116 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 PANK2Q9BZ23 570 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 SLITRK6Q9H5Y7 841 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 MRPL44Q9H9J2 332 aaKnown RBP20.55■□□□□ 0.88
VPS35-202ENST00000561713 RBM12Q9NTZ6 932 aaKnown RBP20.55■□□□□ 0.88
VPS35-202ENST00000561713 SLC27A5Q9Y2P5 690 aa20.55■□□□□ 0.88
VPS35-202ENST00000561713 CHURC1-FNTBB4DL54 471 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 HRO43593 1189 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 RETP07949 1114 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 ADSSP30520 456 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 STAT6P42226 847 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 SOX9P48436 509 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 FNTBP49356 437 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 SRSF5Q13243 272 aaKnown RBP20.54■□□□□ 0.88
VPS35-202ENST00000561713 SIM2Q14190 667 aaPredicted RBP20.54■□□□□ 0.88
VPS35-202ENST00000561713 WDR44Q5JSH3 913 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 STXBP5Q5T5C0 1151 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 ZNF720Q7Z2F6 126 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 ATAD1Q8NBU5 361 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 SAAL1Q96ER3 474 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 LRRC3Q9BY71 257 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 BACH2Q9BYV9 841 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 CHD8Q9HCK8 2581 aa20.54■□□□□ 0.88
VPS35-202ENST00000561713 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 A0A1W2PRU2 124 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 OR6C75A6NL08 312 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 SLC38A8A6NNN8 435 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 K7ELQ4 463 aaPredicted RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 GCNT3O95395 438 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 IDEP14735 1019 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 TYMPP19971 482 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 SCP2P22307 547 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 FOXD4L5Q5VV16 416 aaPredicted RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 CRELD2Q6UXH1 353 aaPredicted RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 TMC8Q8IU68 726 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 YAF2Q8IY57 180 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 SPEM1Q8N4L4 309 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 PDILTQ8N807 584 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 NETO1Q8TDF5 533 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 CSGALNACT1Q8TDX6 532 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 NOC3LQ8WTT2 800 aaKnown RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 FOXD4L4Q8WXT5 416 aaPredicted RBP20.53■□□□□ 0.88
VPS35-202ENST00000561713 GPR88Q9GZN0 384 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 ST6GALNAC4Q9H4F1 302 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 SEMA4GQ9NTN9 838 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 STYXL1Q9Y6J8 313 aa20.53■□□□□ 0.88
VPS35-202ENST00000561713 CFAP47Q6ZTR5 3102 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 ANO9A1A5B4 782 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms