RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 DNA2P51530 1060 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 DAAM2Q86T65 1068 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 PGBD4Q96DM1 585 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 CRISPLD2Q9H0B8 497 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 TSPYL2Q9H2G4 693 aaPredicted RBP22.63■■□□□ 1.21
CLN3-209ENST00000561689 RGS18Q9NS28 235 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 CNOT8Q9UFF9 292 aaKnown RBP22.63■■□□□ 1.21
CLN3-209ENST00000561689 GTF3C4Q9UKN8 822 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 SNX12Q9UMY4 172 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 SCN1AP35498 2009 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 NBNO60934 754 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 POMCP01189 267 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 LILRA4P59901 499 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 MEI1Q5TIA1 1274 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 SMYD5Q6GMV2 418 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 FBXO46Q6PJ61 603 aaPredicted RBP22.63■■□□□ 1.21
CLN3-209ENST00000561689 SLC39A5Q6ZMH5 540 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 DPH6Q7L8W6 267 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 LINC01599Q8WXQ3 324 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 RABGGTAQ92696 567 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 C11orf70Q9BRQ4 267 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 INPP5FQ9Y2H2 1132 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 ZNF185O15231 689 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 SKIP12755 728 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 CXCR5P32302 372 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 TUBB2AQ13885 445 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 GPNMBQ14956 572 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 LLGL2Q6P1M3 1020 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 DENND1BQ6P3S1 775 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 ZNF598Q86UK7 904 aaKnown RBP22.62■■□□□ 1.21
CLN3-209ENST00000561689 C1orf131Q8NDD1 294 aaKnown RBP22.62■■□□□ 1.21
CLN3-209ENST00000561689 TUBB2BQ9BVA1 445 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 NUP85Q9BW27 656 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 NT5C1AQ9BXI3 368 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 PCDHGC3Q9UN70 934 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 NME7Q9Y5B8 376 aa22.62■■□□□ 1.21
CLN3-209ENST00000561689 MED7O43513 233 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 RRM1P23921 792 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 SV2CQ496J9 727 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 MMS22LQ6ZRQ5 1243 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 MON1BQ7L1V2 547 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 TTC39CQ8N584 583 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 WDTC1Q8N5D0 677 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 MNS1Q8NEH6 495 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 OR6B3Q8NGW1 331 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 DIS3LQ8TF46 1054 aaKnown RBP22.61■■□□□ 1.21
CLN3-209ENST00000561689 CAPZA3Q96KX2 299 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 GDAP2Q9NXN4 497 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 ADAM22Q9P0K1 906 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 HYOU1Q9Y4L1 999 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 C9IYK1 514 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 LSM8O95777 96 aaKnown RBP22.61■■□□□ 1.21
CLN3-209ENST00000561689 CLCNKBP51801 687 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 LBX1P52954 281 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 TCEAL1Q15170 157 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 SLC24A5Q71RS6 500 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 SLFN11Q7Z7L1 901 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 PHF13Q86YI8 300 aaPredicted RBP22.61■■□□□ 1.21
CLN3-209ENST00000561689 TMEM35BQ8NCS4 154 aa22.61■■□□□ 1.21
CLN3-209ENST00000561689 FAM124BQ9H5Z6 455 aaPredicted RBP22.61■■□□□ 1.21
CLN3-209ENST00000561689 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLN3-209ENST00000561689 V9GYY5 206 aaPredicted RBP22.61■■□□□ 1.21
CLN3-209ENST00000561689 CASTOR2A6NHX0 329 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 HCRTO43612 131 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 C12orf29Q8N999 325 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 COG1Q8WTW3 980 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 KBTBD7Q8WVZ9 684 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 OSBPL9Q96SU4 736 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 PAAF1Q9BRP4 392 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 UBN1Q9NPG3 1134 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 MYH10P35580 1976 aa22.6■■□□□ 1.21
CLN3-209ENST00000561689 PITPNM1O00562 1244 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 PODXLO00592 558 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 FGFR1P11362 822 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 VDRP11473 427 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 NAA30Q147X3 362 aaPredicted RBP22.59■■□□□ 1.21
CLN3-209ENST00000561689 WHAMMP3Q1A5X7 153 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 TRIM60Q495X7 471 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 ANKRD33Q7Z3H0 272 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 PEX26Q7Z412 305 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 ACOT1Q86TX2 421 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 SYCE1Q8N0S2 351 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 APPL2Q8NEU8 664 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 DBF4BQ8NFT6 615 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 ZNF564Q8TBZ8 553 aaPredicted RBP22.59■■□□□ 1.21
CLN3-209ENST00000561689 TRIM11Q96F44 468 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 BTBD6Q96KE9 485 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 L1RE1Q9UN81 338 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 CEP83Q9Y592 693 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 PDCD11Q14690 1871 aaKnown RBP22.59■■□□□ 1.21
CLN3-209ENST00000561689 CTIFO43310 598 aaKnown RBP22.59■■□□□ 1.21
CLN3-209ENST00000561689 MYBL1P10243 752 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 HADHBP55084 474 aaKnown RBP22.59■■□□□ 1.21
CLN3-209ENST00000561689 PTP4A2Q12974 167 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 SGO2Q562F6 1265 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 UVRAGQ9P2Y5 699 aa22.59■■□□□ 1.21
CLN3-209ENST00000561689 TMEM110-MUSTN1A8MSY1 372 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 A8MXQ7 604 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 HUS1O60921 280 aa22.58■■□□□ 1.21
CLN3-209ENST00000561689 MICAL2O94851 1124 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms