RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	TMIE	Q8NEW7	156 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	IL17RD	Q8NFM7	739 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	POC1B	Q8TC44	478 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	PACSIN1	Q9BY11	444 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	TPSD1	Q9BZJ3	242 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	IMPG2	Q9BZV3	1241 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	CYP2D7	A0A087X1C5	515 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	SMIM22	K7EJ46	135 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	TRIAP1	O43715	76 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	CDC45	O75419	566 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	NXPH3	O95157	252 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	JUP	P14923	745 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	MTNR1B	P49286	362 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	FLYWCH1	Q4VC44	716 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	AARS2	Q5JTZ9	985 aa	Known RBP	3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	CATSPERG	Q6ZRH7	1159 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	ZNF804A	Q7Z570	1209 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	SSH1	Q8WYL5	1049 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	TRIB1	Q96RU8	372 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	SMO	Q99835	787 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	ARHGEF3	Q9NR81	526 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	DNAJC28	Q9NX36	388 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435	DKK3	Q9UBP4	350 aa		3.87	□□□□□ -1.79
SPG11-222	ENST00000560435		F5H697	171 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	SOCS2	O14508	198 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	DNAJB5	O75953	348 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	FAM163B	P0C2L3	166 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	OSM	P13725	252 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	GPR3	P46089	330 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	NDUFV1	P49821	464 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	LINC00205	P59089	165 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	TARDBP	Q13148	414 aa	Known RBP eCLIP	3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	DAZAP2	Q15038	168 aa	Predicted RBP	3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	TRIP6	Q15654	476 aa	Known RBP	3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	CCDC144B	Q3MJ40	725 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	ANKRD16	Q6P6B7	361 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	RHOT1	Q8IXI2	618 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	FANCB	Q8NB91	859 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	FBXO41	Q8TF61	875 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	ATRIP	Q8WXE1	791 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	TMX3	Q96JJ7	454 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	ACTRT3	Q9BYD9	372 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	AMBRA1	Q9C0C7	1298 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	CCM2L	Q9NUG4	571 aa	Predicted RBP	3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	SLC45A2	Q9UMX9	530 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	AFG3L2	Q9Y4W6	797 aa		3.86	□□□□□ -1.79
SPG11-222	ENST00000560435	ANXA1	P04083	346 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	MYCLP1	P12525	358 aa	Predicted RBP	3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	ARHGAP25	P42331	645 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	WAS	P42768	502 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	TBCC	Q15814	346 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	TEDDM1	Q5T9Z0	273 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	KIAA1161	Q6NSJ0	714 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	DDX46	Q7L014	1031 aa	Known RBP	3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	MEPCE	Q7L2J0	689 aa	Known RBP	3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	RSPH3	Q86UC2	560 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	AOPEP	Q8N6M6	819 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	SLC17A8	Q8NDX2	589 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	IFI44	Q8TCB0	444 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	PIGO	Q8TEQ8	1089 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	DPF2	Q92785	391 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	MARK4	Q96L34	752 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	CAMKK2	Q96RR4	588 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	PIF1	Q9H611	641 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	VTA1	Q9NP79	307 aa		3.85	□□□□□ -1.79
SPG11-222	ENST00000560435	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	3.85	□□□□□ -1.79
SPG11-222	ENST00000560435		E5RJQ4	531 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435		E9PLN8	166 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435		H0YIZ8	118 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	BCAR3	O75815	825 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	CDC42EP1	Q00587	391 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	FAP	Q12884	760 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	LRRC41	Q15345	812 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	DLK2	Q6UY11	383 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	CNGA4	Q8IV77	575 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	C8orf58	Q8NAV2	365 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	KLHDC4	Q8TBB5	520 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	NSMCE1	Q8WV22	266 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	SREK1	Q8WXA9	508 aa	Known RBP	3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	VKORC1	Q9BQB6	163 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	TDP1	Q9NUW8	608 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	C14orf119	Q9NWQ9	140 aa		3.84	□□□□□ -1.79
SPG11-222	ENST00000560435	POLRMT	O00411	1230 aa	Known RBP	3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	SOAT2	O75908	522 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	STRN3	Q13033	797 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	TWIST1	Q15672	202 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435		Q4G0T1	1027 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	ZNF618	Q5T7W0	954 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	WDR53	Q7Z5U6	358 aa	Predicted RBP	3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	MRPL10	Q7Z7H8	261 aa	Known RBP	3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	RNF180	Q86T96	592 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	FAM109A	Q8N4B1	249 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	PRSS3P2	Q8NHM4	247 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	NRG4	Q8WWG1	115 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	RAB24	Q969Q5	203 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	FAM136A	Q96C01	138 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	C5orf34	Q96MH7	638 aa		3.83	□□□□□ -1.8
SPG11-222	ENST00000560435	ASB2	Q96Q27	587 aa		3.83	□□□□□ -1.8

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