RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ATF7P17544 494 aaPredicted RBP13.49□□□□□ -0.25
USP3-213ENST00000559711 COMTP21964 271 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 SSTR3P32745 418 aaPredicted RBP13.49□□□□□ -0.25
USP3-213ENST00000559711 HTRA3P83110 453 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 NFX1Q12986 1120 aaKnown RBP13.49□□□□□ -0.25
USP3-213ENST00000559711 MESDQ14696 234 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 PTPROQ16827 1216 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 FBXO47Q5MNV8 452 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 USP38Q8NB14 1042 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 SLC43A3Q8NBI5 491 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 GLT1D1Q96MS3 346 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 C11orf70Q9BRQ4 267 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 TRAIPQ9BWF2 469 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 WNT8AQ9H1J5 351 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 CARD9Q9H257 536 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 TRMT13Q9NUP7 481 aaKnown RBP13.49□□□□□ -0.25
USP3-213ENST00000559711 FAM105AQ9NUU6 356 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 HMGXB4Q9UGU5 601 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 SQORQ9Y6N5 450 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 THSD7BQ9C0I4 1608 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 CENPFP49454 3210 aa13.49□□□□□ -0.25
USP3-213ENST00000559711 TARSL2A2RTX5 802 aaKnown RBP13.48□□□□□ -0.25
USP3-213ENST00000559711 CEP104O60308 925 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 CALB1P05937 261 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 RHOXF2BP0C7M4 288 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 VDRP11473 427 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 CD19P15391 556 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 PNPLA4P41247 253 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 PEX5P50542 639 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 NDST1P52848 882 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 C2orf54Q08AI8 447 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 MAMLD1Q13495 774 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 CNGA2Q16280 664 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 DENND1BQ6P3S1 775 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 MMS22LQ6ZRQ5 1243 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 MRPL10Q7Z7H8 261 aaKnown RBP13.48□□□□□ -0.25
USP3-213ENST00000559711 HACE1Q8IYU2 909 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 C1orf131Q8NDD1 294 aaKnown RBP13.48□□□□□ -0.25
USP3-213ENST00000559711 RHOXF2Q9BQY4 288 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.48□□□□□ -0.253e-7■□□□□ 11.3
USP3-213ENST00000559711 NT5C1AQ9BXI3 368 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 MRPL47Q9HD33 250 aaKnown RBP13.48□□□□□ -0.25
USP3-213ENST00000559711 ARGLU1Q9NWB6 273 aaPredicted RBP13.48□□□□□ -0.25
USP3-213ENST00000559711 GDAP2Q9NXN4 497 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 PADI3Q9ULW8 664 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 CEP83Q9Y592 693 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 SNX9Q9Y5X1 595 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 SCINQ9Y6U3 715 aa13.48□□□□□ -0.25
USP3-213ENST00000559711 TCRBV5S1A1TA0A578 114 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 MYO1FO00160 1098 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 PTGESO14684 152 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 ZNF623O75123 536 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 CTNNA2P26232 953 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 LRPAP1P30533 357 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 SLC1A1P43005 524 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 CLCN6P51797 869 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 DSC3Q14574 896 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 LPIN1Q14693 890 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 BRD3Q15059 726 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 C2CD6Q53TS8 623 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 DCAF12L1Q5VU92 463 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 WDR93Q6P2C0 686 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 LIMS2Q7Z4I7 341 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 UBL4BQ8N7F7 174 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 BTBD6Q96KE9 485 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 PPP1R10Q96QC0 940 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 PNKPQ96T60 521 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 OSBPL7Q9BZF2 842 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 RBM12Q9NTZ6 932 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 RNF19AQ9NV58 838 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 PARVAQ9NVD7 372 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 ANAPC7Q9UJX3 599 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 NOD1Q9Y239 953 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 CCDC66A2RUB6 948 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 TMEM110-MUSTN1A8MSY1 372 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 PGRMC1O00264 195 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 O00370 1275 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 ITGA4P13612 1032 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 CD52P31358 61 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 CTNNA1P35221 906 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 SOX4Q06945 474 aaPredicted RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 GLE1Q53GS7 698 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 SGO2Q562F6 1265 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 LLGL2Q6P1M3 1020 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 UNC93AQ86WB7 457 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 ERICH1Q86X53 443 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 GSTCDQ8NEC7 633 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 ALG3Q92685 438 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 HEXIM2Q96MH2 286 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 ZNF560Q96MR9 790 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 MRPL45Q9BRJ2 306 aaKnown RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.47□□□□□ -0.25
USP3-213ENST00000559711 GIT1Q9Y2X7 761 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 PCDHA3Q9Y5H8 950 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.47□□□□□ -0.25
USP3-213ENST00000559711 PTCH2Q9Y6C5 1203 aa13.47□□□□□ -0.25
USP3-213ENST00000559711 A0A1W2PQ45 241 aaPredicted RBP13.46□□□□□ -0.26
USP3-213ENST00000559711 A0A1W2PQY0 241 aa13.46□□□□□ -0.26
USP3-213ENST00000559711 CCDC151A5D8V7 595 aa13.46□□□□□ -0.26
USP3-213ENST00000559711 KPNA7A9QM74 516 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms