RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FKBP10Q96AY3 582 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 OSBPL9Q96SU4 736 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 VKORC1Q9BQB6 163 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 GNL3LQ9NVN8 582 aaKnown RBP6.04□□□□□ -1.44
VPS13C-208ENST00000559119 PCDHB1Q9Y5F3 818 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 MRFAP1Q9Y605 127 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 ZNF785A8K8V0 405 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 HNRNPCP07910 306 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 MYBL2P10244 700 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 ZFXP17010 805 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 DRD4P21917 467 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 EDNRBP24530 442 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 CYP2C19P33261 490 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 PSMC1P62191 440 aaKnown RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 KHDC1Q4VXA5 237 aaKnown RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 MTX3Q5HYI7 312 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 DDX42Q86XP3 938 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 RFKQ969G6 155 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 COA7Q96BR5 231 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 DMRTA2Q96SC8 542 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 VRK1Q99986 396 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 ACTRT3Q9BYD9 372 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 SIDT1Q9NXL6 827 aaKnown RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 CFAP97Q9P2B7 532 aa6.03□□□□□ -1.44
VPS13C-208ENST00000559119 CFAP20Q9Y6A4 193 aaKnown RBP6.03□□□□□ -1.44
VPS13C-208ENST00000559119 ZNF804BA4D1E1 1349 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 F2RL2O00254 374 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 SOAT2O75908 522 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 CHEK2O96017 543 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 ITGALP20701 1170 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 MALP21145 153 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 SMARCA1P28370 1054 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 EIF2B5Q13144 721 aaKnown RBP6.02□□□□□ -1.45
VPS13C-208ENST00000559119 UAP1L1Q3KQV9 507 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 TTC7BQ86TV6 843 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 CNPPD1Q9BV87 410 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 AMBRA1Q9C0C7 1298 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 RLIMQ9NVW2 624 aa6.02□□□□□ -1.45
VPS13C-208ENST00000559119 TARM1B6A8C7 271 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA12O60330 932 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 GJB1P08034 283 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PRR35P0CG20 571 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 NDUFB7P17568 137 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 LPOP22079 712 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 CTGFP29279 349 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 TFF2Q03403 129 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 SNAPC2Q13487 334 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 BMPR2Q13873 1038 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 TBCCQ15814 346 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 SLC4A10Q6U841 1118 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 ZNF782Q6ZMW2 699 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 ZNF551Q7Z340 670 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 Q8N9P0 234 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PSD4Q8NDX1 1056 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 NSUN6Q8TEA1 469 aaKnown RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 SIK2Q9H0K1 926 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 SERTAD4Q9NUC0 356 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA9Q9Y5G4 932 aaKnown RBP6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA8Q9Y5G5 932 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA7Q9Y5G6 932 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA6Q9Y5G7 932 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 PCDHGA3Q9Y5H0 932 aa6.01□□□□□ -1.45
VPS13C-208ENST00000559119 KELP23276 732 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 ZNF135P52742 658 aaPredicted RBP6□□□□□ -1.45
VPS13C-208ENST00000559119 HABP2Q14520 560 aaPredicted RBP6□□□□□ -1.45
VPS13C-208ENST00000559119 ABCB5Q2M3G0 1257 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 RBM20Q5T481 1227 aaKnown RBP6□□□□□ -1.45
VPS13C-208ENST00000559119 SYDE2Q5VT97 1194 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 TAF2Q6P1X5 1199 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 CEP85Q6P2H3 762 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 ATRIPQ8WXE1 791 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 FAM136AQ96C01 138 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 TEKT5Q96M29 485 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 SEMA4CQ9C0C4 833 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 SMOC2Q9H3U7 446 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 SLAMF7Q9NQ25 335 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 NRIP3Q9NQ35 241 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 ETAA1Q9NY74 926 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 DKK3Q9UBP4 350 aa6□□□□□ -1.45
VPS13C-208ENST00000559119 VPS4BO75351 444 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 NXPH3O95157 252 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 FAM163BP0C2L3 166 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 CHRM3P20309 590 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 CD6P30203 668 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 TEDDM1Q5T9Z0 273 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 ZNF626Q68DY1 528 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 C9orf106Q8NAJ2 232 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 ARHGEF3Q9NR81 526 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 SH3BP4Q9P0V3 963 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 SERGEFQ9UGK8 458 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 TRHDEQ9UKU6 1024 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-208ENST00000559119 RAD54BQ9Y620 910 aa5.99□□□□□ -1.45
VPS13C-208ENST00000559119 SHTN1A0MZ66 631 aa5.98□□□□□ -1.45
VPS13C-208ENST00000559119 NT5C1B-RDH14C9J2C7 533 aa5.98□□□□□ -1.45
VPS13C-208ENST00000559119 JTBO76095 146 aa5.98□□□□□ -1.45
VPS13C-208ENST00000559119 PTGER1P34995 402 aa5.98□□□□□ -1.45
VPS13C-208ENST00000559119 SSBP2P81877 361 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-208ENST00000559119 SLC44A4Q53GD3 710 aa5.98□□□□□ -1.45
VPS13C-208ENST00000559119 PNMA8AQ86V59 439 aaPredicted RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms