RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MOSPD3O75425 235 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 CYP2D6P10635 497 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 MMP13P45452 471 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 ALDH9A1P49189 494 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 POLGP54098 1239 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 KLF1Q13351 362 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 FHL1Q13642 323 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 TBCCQ15814 346 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 GPR162Q16538 588 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 RNF219Q5W0B1 726 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 NOP9Q86U38 636 aaKnown RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 FANCBQ8NB91 859 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 TBC1D5Q92609 795 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 SCAMP4Q969E2 229 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 RFKQ969G6 155 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 PUS7Q96PZ0 661 aaKnown RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 OSBPL9Q96SU4 736 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 ARHGEF3Q9NR81 526 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 VSX1Q9NZR4 365 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 CALCOCO1Q9P1Z2 691 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-205ENST00000558088 SMIM22K7EJ46 135 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 QSOX1O00391 747 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 TRIM38O00635 465 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 CHEK2O96017 543 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 FAM163BP0C2L3 166 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 MPGP29372 298 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 CD6P30203 668 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF280AP59817 542 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-205ENST00000558088 ACAP2Q15057 778 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 FLYWCH1Q4VC44 716 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 SLC18B1Q6NT16 456 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 SLC30A10Q6XR72 485 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 TMPRSS9Q7Z410 1059 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 PDSS2Q86YH6 399 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 ATL2Q8NHH9 583 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 POC1BQ8TC44 478 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 COG1Q8WTW3 980 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 CLPTM1LQ96KA5 538 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF48Q96MX3 618 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-205ENST00000558088 CNPPD1Q9BV87 410 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 BRD9Q9H8M2 597 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 ANLNQ9NQW6 1124 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 SERTAD4Q9NUC0 356 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 CFAP97Q9P2B7 532 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 SERGEFQ9UGK8 458 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 SLC45A2Q9UMX9 530 aa3.61□□□□□ -1.83
VPS13C-205ENST00000558088 TRIM75PA6NK02 468 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF785A8K8V0 405 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 PPEF2O14830 753 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 NDUFS2O75306 463 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 CLSTN1O94985 981 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 LATS1O95835 1130 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 TUBB4AP04350 444 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 SMARCA1P28370 1054 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 RGS19P49795 217 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 ERVK-21P61565 698 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 TLE1Q04724 770 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 CCDC93Q567U6 631 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 AARS2Q5JTZ9 985 aaKnown RBP3.6□□□□□ -1.83
VPS13C-205ENST00000558088 RBM20Q5T481 1227 aaKnown RBP3.6□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF618Q5T7W0 954 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 PXDC1Q5TGL8 231 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 PRAMEF17Q5VTA0 474 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 ANKRD16Q6P6B7 361 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 PSD4Q8NDX1 1056 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 FBXO41Q8TF61 875 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 FAM136AQ96C01 138 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 HMCESQ96FZ2 354 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 LRIG1Q96JA1 1093 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 RLIMQ9NVW2 624 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 MKS1Q9NXB0 559 aa3.6□□□□□ -1.83
VPS13C-205ENST00000558088 K7ESF4 209 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 EYA4O95677 639 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 POU3F3P20264 500 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-205ENST00000558088 CYP2C19P33261 490 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 MASP1P48740 699 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF135P52742 658 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-205ENST00000558088 PSMC1P62191 440 aaKnown RBP3.59□□□□□ -1.83
VPS13C-205ENST00000558088 GTF2H3Q13889 308 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 PROSER3Q2NL68 480 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 PGM2L1Q6PCE3 622 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF66Q6ZN08 573 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 CNGA4Q8IV77 575 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 MRGPRX4Q96LA9 322 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 WACQ9BTA9 647 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 AMBRA1Q9C0C7 1298 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 SIDT1Q9NXL6 827 aaKnown RBP3.59□□□□□ -1.83
VPS13C-205ENST00000558088 TUBA8Q9NY65 449 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-205ENST00000558088 ELOVL5Q9NYP7 299 aa3.59□□□□□ -1.83
VPS13C-205ENST00000558088 MYMKA6NI61 221 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 KCNU1A8MYU2 1149 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 E9PLN8 166 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 GJB1P08034 283 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 SNHG28P0DPA3 235 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 HSD3B2P26439 372 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 TKTP29401 623 aaKnown RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 EEFSECP57772 596 aaKnown RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 LAMB3Q13751 1172 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 SUPT20HL1Q3ZLR7 823 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms