RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MYPNQ86TC9 1320 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 SCN9AQ15858 1988 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 COL2A1P02458 1487 aaPredicted RBP13.02□□□□□ -0.32
LDLR-205ENST00000557933 DICER1Q9UPY3 1922 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 AVILO75366 819 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 TOP3BO95985 862 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 HOXA7P31268 230 aaPredicted RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 HADHBP55084 474 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 SATB1Q01826 763 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 MOGSQ13724 837 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 RNF43Q68DV7 783 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 PPP1R21Q6ZMI0 780 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 DPH6Q7L8W6 267 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 RHPN2Q8IUC4 686 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 C12orf50Q8NA57 414 aaPredicted RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 C10orf82Q8WW14 230 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 NRG4Q8WWG1 115 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 ZNF75CPQ92670 426 aaPredicted RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 TMEM39BQ9GZU3 492 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 TMEM206Q9H813 350 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 KMT5AQ9NQR1 393 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 TBX20Q9UMR3 447 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.02□□□□□ -0.33
LDLR-205ENST00000557933 BRCA2P51587 3418 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 EDF1O60869 148 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 GNAZP19086 355 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 CHRNA5P30532 468 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 QARSP47897 775 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 MRPS9P82933 396 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 GRIK3Q13003 919 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 MTMR1Q13613 665 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 STRIP1Q5VSL9 837 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 NLRX1Q86UT6 975 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 CCDC89Q8N998 374 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 KIFAP3Q92845 792 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 TAAR1Q96RJ0 339 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 CADM1Q9BY67 442 aaKnown RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 C1orf112Q9NSG2 853 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 KANSL3Q9P2N6 904 aa13.02□□□□□ -0.33
LDLR-205ENST00000557933 ASTN2O75129 1339 aaPredicted RBP13.02□□□□□ -0.33
LDLR-205ENST00000557933 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 CAPN9O14815 690 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CLGNO14967 610 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 USP1O94782 785 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CCNE2O96020 404 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 VIL1P09327 827 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 INHBEP58166 350 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 NLRP11P59045 1033 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 NFX1Q12986 1120 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 NR1H3Q13133 447 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 KLF1Q13351 362 aaPredicted RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 FNBP1LQ5T0N5 605 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 FAXCQ5TGI0 409 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 TATDN1Q6P1N9 297 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 HHIPL2Q6UWX4 724 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 ALYREFQ86V81 257 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 CCNJLQ8IV13 435 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 DNAJC9Q8WXX5 260 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 GMCL1Q96IK5 515 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 FAM111AQ96PZ2 611 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 RAB3IPQ96QF0 476 aaPredicted RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 MXRA8Q9BRK3 442 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 LRMDAQ9H2I8 198 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 SPATS2LQ9NUQ6 558 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 PCSK1NQ9UHG2 260 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CHMP2BQ9UQN3 213 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 ECE2O60344 883 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 P4HBP07237 508 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 CD48P09326 243 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 UNGP13051 313 aaPredicted RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 DPEP1P16444 411 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CETN2P41208 172 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 SARNPP82979 210 aaKnown RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 MAMLD1Q13495 774 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 WDR72Q3MJ13 1102 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 ACSBG2Q5FVE4 666 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CLNKQ7Z7G1 428 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CROCCP2Q86T23 111 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CDR2LQ86X02 465 aaPredicted RBP13.01□□□□□ -0.33
LDLR-205ENST00000557933 TMEM161BQ8NDZ6 487 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 JDP2Q8WYK2 163 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 CEP170P1Q96L14 293 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 ZDHHC15Q96MV8 337 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 PIM2Q9P1W9 311 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 FZD1Q9UP38 647 aa13.01□□□□□ -0.33
LDLR-205ENST00000557933 E5RJQ4 531 aa13□□□□□ -0.33
LDLR-205ENST00000557933 DHX15O43143 795 aaKnown RBP13□□□□□ -0.33
LDLR-205ENST00000557933 BGNP21810 368 aa13□□□□□ -0.33
LDLR-205ENST00000557933 GPX6P59796 221 aa13□□□□□ -0.33
LDLR-205ENST00000557933 OGDHQ02218 1023 aa13□□□□□ -0.33
LDLR-205ENST00000557933 KDSRQ06136 332 aa13□□□□□ -0.33
LDLR-205ENST00000557933 STAT4Q14765 748 aa13□□□□□ -0.33
LDLR-205ENST00000557933 ANO5Q75V66 913 aa13□□□□□ -0.33
LDLR-205ENST00000557933 SLC9A9Q8IVB4 645 aa13□□□□□ -0.33
LDLR-205ENST00000557933 EMC1Q8N766 993 aa13□□□□□ -0.33
LDLR-205ENST00000557933 EFCAB3Q8N7B9 438 aa13□□□□□ -0.33
LDLR-205ENST00000557933 HIPK4Q8NE63 616 aa13□□□□□ -0.33
LDLR-205ENST00000557933 GRK7Q8WTQ7 553 aa13□□□□□ -0.33
LDLR-205ENST00000557933 APOBEC3GQ9HC16 384 aaKnown RBP13□□□□□ -0.33
LDLR-205ENST00000557933 FAM237BA0A1B0GVD1 139 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms